bd989 (bd989) rps20Thalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
bd989	bd_26x41	(bd989) rps20	25370	25638	+	rps20

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0008

Most Highly Correlated Transcripts

ThpsCp035 (rps20) ribosomal protein S20 1	21669 hypothetical protein 0.8589	ThpsCp044 (psaM) photosystem I reaction center subunit M 0.8445	33161 prfA 0.8413	10271 hypothetical protein 0.827	ThpsCp075 (ycf89) hypothetical protein 0.8243
ThpsCp142 (ycf89') hypothetical protein 0.8243	ThpsCp091 (thiS) thiamine biosynthesis protein 0.8156	7740 hypothetical protein 0.8124	5013 hypothetical protein 0.8083

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
rps20		ribosomal protein S20	cl00384	101.761	3.40E-29	1 - 88	specific	214366
Ribosomal_S20p superfamily		Ribosomal protein S20; Bacterial ribosomal protein S20 interacts with 16S rRNA.	-	101.761	3.40E-29	1 - 88	superfamily	260396

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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