32914 (risp1) Rieske_cytochrome_bc1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
32914 chr_3 (risp1) Rieske_cytochrome_bc1 289236 289979 + Rieske_cytochrome_bc1

Synonyms

NCBI ID Ensembl Genomes exon ID
7442482 Thaps32914.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0443

Most Highly Correlated Transcripts

15398

FtsZ_type1
0.8711

10527

hypothetical protein
0.857

19298

F1-ATPase_delta
0.8547

22673

NA
0.8517

42867

Cytochrom_C1
0.8512

35136

NA
0.844

3229

hypothetical protein
0.8394

8461

hypothetical protein
0.8377

10025

WD40 superfamily
0.8358

9321

Sm_D3
0.8323

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain... cl00938 250.94 9.99E-85 126 - 247 specific 239552
Rieske superfamily Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (... - 250.94 9.99E-85 126 - 247 superfamily 260709
UCR_TM superfamily Ubiquinol cytochrome reductase transmembrane region; Each subunit of the cytochrome bc1 complex... - 58.145 8.55E-12 80 - 118 superfamily 251620
UCR_TM superfamily Ubiquinol cytochrome reductase transmembrane region; Each subunit of the cytochrome bc1 complex... - 58.145 8.55E-12 80 - 118 superfamily 251620
Rieske_proteo ubiquinol-cytochrome c reductase, iron-sulfur subunit; This model represents the Proteobacterial... - 222.257 9.38E-73 83 - 247 multi-dom 233404

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_12233 PHATRDRAFT_12233 271239 323999 439725 Cre01.g051900.t1.2 AT5G13430.1 Not available

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0006118 GO:0008121 GO:0015008 GO:0016020 GO:0045285 GO:0016491 -

GO:0006118

NA

Details: 
NA
GO Category: 
NA

GO:0008121

ubiquinol-cytochrome-c reductase activity

Details: 
Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: CoQH2 + 2 ferricytochrome c = CoQ + 2 ferrocytochrome c + 2 H+.
GO Category: 
MF

GO:0015008

NA

Details: 
NA
GO Category: 
NA

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

GO:0045285

NA

Details: 
NA
GO Category: 
NA

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

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