9321 Sm_D3
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
9321 chr_13 Sm_D3 117529 118288 + Sm_D3

Synonyms

NCBI ID Ensembl Genomes exon ID
7450560 Thaps9321.1, Thaps9321.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0426

Most Highly Correlated Transcripts

plastid_psb28

0.923

35136

NA
0.9021

36007

Aldolase_II superfamily
0.8849

35907

Prp18
0.8801

8937

hypothetical protein
0.8795

9247

hypothetical protein
0.8739

38335

(PSB3) proteasome_beta_type_3
0.8712

263665

(RT17) rpsQ
0.8708

261607

IF4E
0.8619

261627

(GPX2) GSH_Peroxidase
0.8618

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Sm_D3 Sm protein D3; The eukaryotic Sm proteins (B/B', D1, D2, D3, E, F and G) assemble into a... cl00259 103.37 7.77E-29 87 - 143 specific 212468
Sm_like superfamily Sm and related proteins; The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form... - 103.37 7.77E-29 87 - 143 superfamily 260307

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_9168 PHATRDRAFT_9168 210287 245712 438450 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Spliceosome map03040

GO Terms

GO:0005634 GO:0005732 GO:0006397 GO:0030529 -

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0005732

small nucleolar ribonucleoprotein complex

Details: 
A ribonucleoprotein complex that contains an RNA molecule of the small nucleolar RNA (snoRNA) family and associated proteins. Most are involved in a step of processing of rRNA: cleavage, 2'-O-methylation, or pseudouridylation. The majority, though not all, fall into one of two classes, box C/D type or box H/ACA type.
GO Category: 
CC

GO:0006397

mRNA processing

Details: 
Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
GO Category: 
BP

GO:0030529

ribonucleoprotein complex

Details: 
A macromolecular complex containing both protein and RNA molecules.
GO Category: 
CC

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