33126 Rab8_Rab10_Rab13_like
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
33126 chr_3 Rab8_Rab10_Rab13_like 1335336 1335956 + Rab8_Rab10_Rab13_like

Synonyms

NCBI ID Ensembl Genomes exon ID
7451266 Thaps33126.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0480

Most Highly Correlated Transcripts

33199

(TpSec4b) Rab8_Rab10_Rab13_like
0.9195

4150

(Tp_bZIP11) regulator [Rayko]
0.878

4540

hypothetical protein
0.8766

22900

hypothetical protein
0.8751

20651

MATE_like superfamily
0.8733

37118

FeThRed_B
0.8637

35728

FtsZ_type1
0.8606

36742

(KCT2) thiolase
0.8598

2314

hypothetical protein
0.8585

11166

(Tp_CCHH12) regulator [Rayko]
0.8553

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Rab8_Rab10_Rab13_like Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13); Rab8/Sec4/Ypt2 are known or suspected to be... cl17170 314.976 6.18E-110 8 - 174 specific 206659
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 314.976 6.18E-110 8 - 174 superfamily 266525
PLN03118 Rab family protein; Provisional - 197.2 3.79E-63 3 - 206 multi-dom 215587

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005525 GO:0007264 GO:0006886 GO:0000160 GO:0003677 GO:0006355 GO:0015031 -

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0007264

small GTPase mediated signal transduction

Details: 
Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
GO Category: 
BP

GO:0006886

intracellular protein transport

Details: 
The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO Category: 
BP

GO:0000160

phosphorelay signal transduction system

Details: 
A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
GO Category: 
BP

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0015031

protein transport

Details: 
The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

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