33199 (TpSec4b) Rab8_Rab10_Rab13_like
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
33199 chr_3 (TpSec4b) Rab8_Rab10_Rab13_like 1317120 1317740 - Rab8_Rab10_Rab13_like

Synonyms

NCBI ID Ensembl Genomes exon ID
7441917 Thaps33199.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0480

Most Highly Correlated Transcripts

33126

Rab8_Rab10_Rab13_like
0.9195

9679

ABD superfamily
0.8614

10071

hypothetical protein
0.8596

17214

PLN02512
0.8538

264137

(GPA2) G_alpha
0.8513

3438

hypothetical protein
0.8476

25918

Porin3 superfamily
0.8473

1131

hypothetical protein
0.8455

924

MIP superfamily
0.8439

4495

hypothetical protein
0.8401

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Rab8_Rab10_Rab13_like Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13); Rab8/Sec4/Ypt2 are known or suspected to be... cl17170 314.976 6.18E-110 8 - 174 specific 206659
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 314.976 6.18E-110 8 - 174 superfamily 266525
PLN03118 Rab family protein; Provisional - 197.2 3.79E-63 3 - 206 multi-dom 215587

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_30139 PHATRDRAFT_30139 274606 313486 Not available Not available Not available 353544

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005525 GO:0007264 GO:0006886 GO:0000160 GO:0003677 GO:0006355 GO:0015031 -

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0007264

small GTPase mediated signal transduction

Details: 
Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
GO Category: 
BP

GO:0006886

intracellular protein transport

Details: 
The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO Category: 
BP

GO:0000160

phosphorelay signal transduction system

Details: 
A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
GO Category: 
BP

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0015031

protein transport

Details: 
The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

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