33219 Sdh5Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
33219	chr_3	Sdh5	606255	606860	-	Sdh5

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444065	Thaps33219.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0212

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0261	0.35	400 120

Most Highly Correlated Transcripts

4108 hypothetical protein 0.9886	41655 Chloroa_b-bind 0.9373	3204 hypothetical protein 0.9202	8338 hypothetical protein 0.9167	1871 hypothetical protein 0.915	6960 Methyltransf_31 0.9118
37934 GRX_PICOT_like 0.9101	5701 hypothetical protein 0.9088	3119 hypothetical protein 0.908	26991 GRX_GRXh_1_2_like 0.9032

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Sdh5		Flavinator of succinate dehydrogenase; This family includes the highly conserved mitochondrial and...	cl01110	67.4714	2.67E-15	96 - 175	specific	252260
Sdh5 superfamily		Flavinator of succinate dehydrogenase; This family includes the highly conserved mitochondrial and...	-	67.4714	2.67E-15	96 - 175	superfamily	260793

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATR_43817	PHATR_43817	197601	254839	434617	Cre12.g550750.t1.2	Not available	256191

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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