33601 COG5133 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
33601	chr_4	COG5133 superfamily	252890	253919	+	COG5133 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442059	Thaps33601.2, Thaps33601.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0105

Most Highly Correlated Transcripts

30701 PRK05279 0.9191	23177 SF-assemblin 0.9044	3539 hypothetical protein 0.9026	8498 Ribosomal_L9_N 0.9023	9115 DnaJ 0.9005	19826 LSm1 0.8995
22465 PTZ00169 0.8989	10898 hypothetical protein 0.8975	22686 hypothetical protein 0.8971	25219 hypothetical protein 0.8962

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
COG5133 superfamily		Uncharacterized conserved protein [Function unknown]	-	166.71	2.77E-50	146 - 303	superfamily	227462

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_11954	PHATRDRAFT_11954	163528	252002	64111	Cre11.g479700.t1.2	AT1G68310.2	485469

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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