34701 APG12_C
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
34701 chr_6 APG12_C 1936870 1937412 + APG12_C

Synonyms

NCBI ID Ensembl Genomes exon ID
7446557 Thaps34701.2, Thaps34701.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0120

Most Highly Correlated Transcripts

263864

0.7909

4108

hypothetical protein
0.737

8812

hypothetical protein
0.7141

35390

(KAR3) NADB_Rossmann superfamily
0.7048

264718

(Tp_Myb1R3) BDP1 superfamily
0.6866

10506

hypothetical protein
0.6854

25346

hypothetical protein
0.6787

9246

hypothetical protein
0.6769

17480

PKc_like superfamily
0.6763

9410

Transglut_core
0.6746

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
APG12_C Ubiquitin-like domain of APG12; APG12_C The carboxy-terminal ubiquitin-like domain of APG12.... cl00155 127.002 2.78E-38 65 - 151 specific 176356
UBQ superfamily Ubiquitin-like proteins; Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins.... - 127.002 2.78E-38 65 - 151 superfamily 260222

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 145146 124395 Not available Cre12.g557000.t1.2 AT1G54210.1 469530

KEGG

KEGG description KEGG Pathway
Regulation of autophagy map04140

GO Terms

GO:0000045 GO:0005737 -

GO:0000045

autophagic vacuole assembly

Details: 
The formation of a double membrane-bounded structure, the autophagosome, that occurs when a specialized membrane sac, called the isolation membrane, starts to enclose a portion of the cytoplasm.
GO Category: 
BP

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

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