34710 SNF2_N
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
34710 chr_6 SNF2_N 546834 550318 - SNF2_N

Synonyms

NCBI ID Ensembl Genomes exon ID
7448574 Thaps34710.1, Thaps34710.3, Thaps34710.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0232

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0186
 0.38

Most Highly Correlated Transcripts

32217

MA3
0.9196

42543

2OG-FeII_Oxy_2
0.912

34059

S_TKc
0.9066

168

(RPB1) PRK08566
0.9063

25443

hypothetical protein
0.9053

35929

(MAPKKK) S_TKc
0.9037

10873

NA
0.9013

269503

(Tp_HSF_1e) regulator [Rayko]
0.9004

261777

MIF4G
0.898

33699

TRX_family
0.8938

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 108.479 5.49E-27 589 - 713 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 108.479 5.49E-27 589 - 713 superfamily 238034
DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... cl17251 84.6964 1.13E-18 295 - 437 specific 238005
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 84.6964 1.13E-18 295 - 437 superfamily 266587
SNF2_N SNF2 family N-terminal domain; This domain is found in proteins involved in a variety of processes... - 261.067 5.13E-79 277 - 571 multi-dom 249654

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
262620 Not available 157361 216821 201303 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003677 GO:0005524 GO:0003676 GO:0004386 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0004386

helicase activity

Details: 
Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO Category: 
MF

Add comment

Log in to post comments