35091 RRM3_U2AF65Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
35091	chr_6	RRM3_U2AF65	415538	415958	-	RRM3_U2AF65

Synonyms

NCBI ID	Ensembl Genomes exon ID
7451157	Thaps35091.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0306

Most Highly Correlated Transcripts

13448 Sec1 0.8643	12836 EEP superfamily 0.8492	12899 AAA 0.841	16114 PLN02350 0.8399	261531 GlnA 0.8372	35281 PKc_like superfamily 0.8347
3676 hypothetical protein 0.834	31136 Pkinase_Tyr 0.8339	bd780 (bd780) NA 0.8339	21220 KU superfamily 0.8322

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RRM3_U2AF65		RNA recognition motif 3 found in U2 large nuclear ribonucleoprotein auxiliary factor U2AF 65 kDa...	cl17169	113.035	6.19E-33	43 - 125	specific	240678
RRM_SF superfamily		RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (...	-	113.035	6.19E-33	43 - 125	superfamily	266524

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_10029	PHATRDRAFT_10029	186577	262573	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0003676 -

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