35239 CPSF_A
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
35239 chr_7 CPSF_A 1781666 1785849 + CPSF_A

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0225

Most Highly Correlated Transcripts

26806

PTZ00416
0.901

40925

(RPB21) PRK08565
0.8994

21265

hypothetical protein
0.8986

5295

hypothetical protein
0.8955

269064

Nup84_Nup100 superfamily
0.8914

33946

(Tp_CCHH3) SSL1
0.8863

12836

EEP superfamily
0.879

35726

COG1204
0.8755

21546

hypothetical protein
0.8753

25142

SWIRM
0.8748

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
CPSF_A superfamily CPSF A subunit region; This family includes a region that lies towards the C-terminus of the... - 296.06 1.45E-90 957 - 1274 superfamily 251781
CPSF_A superfamily CPSF A subunit region; This family includes a region that lies towards the C-terminus of the... - 296.06 1.45E-90 957 - 1274 superfamily 251781
MMS1_N superfamily Mono-functional DNA-alkylating methyl methanesulfonate N-term; MMS1 is a protein that protects... - 171.77 3.85E-45 116 - 660 superfamily 255985

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_17408 PHATRDRAFT_17408 260692 289664 421023 Cre08.g372800.t1.1 AT3G55200.1 565381

KEGG

KEGG description KEGG Pathway
Spliceosome map03040

GO Terms

GO:0008152 GO:0016491 GO:0003676 GO:0005634 -

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

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