35933 Paf67 superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
35933	chr_8	Paf67 superfamily	704646	706466	-	Paf67 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7452822	Thaps35933.3, Thaps35933.1, Thaps35933.4, Thaps35933.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0271

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0096	0.39	0.00000031 0.00000074

Most Highly Correlated Transcripts

35164 acolac_lg 0.9452	263630 (MTS) tRNA_bind_EMAP-II_like 0.9059	27873 PLN02274 0.8806	27083 eIF3_N superfamily 0.8774	22293 PLN00178 0.8734	42621 HisS 0.8723
269352 WD40 superfamily 0.872	3058 WD40 superfamily 0.8669	37083 PTZ00037 0.8653	24552 hypothetical protein 0.865

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Paf67 superfamily		RNA polymerase I-associated factor PAF67; RNA polymerase I is a multisubunit enzyme and its...	-	279.202	2.93E-88	91 - 498	superfamily	255854

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_1874	PHATRDRAFT_1874	167073	240715	463792	Cre17.g697450.t1.2	AT5G25757.1	551923

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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