27083 eIF3_N superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
27083 chr_2 eIF3_N superfamily 1089198 1090910 - eIF3_N superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7444646 Thaps27083.2, Thaps27083.3, Thaps27083.1, Thaps27083.4

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0231

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0190
 0.26

Most Highly Correlated Transcripts

264345

SpoU
0.9389

10273

zf-met2
0.9247

1374

RRM
0.9203

22334

hypothetical protein
0.9175

263630

(MTS) tRNA_bind_EMAP-II_like
0.9104

30691

AdoMet_MTases
0.9077

35164

acolac_lg
0.9077

bd1876

(bd1876) NatB_MDM20 superfamily
0.9052

27873

PLN02274
0.9044

21491

hypothetical protein
0.8998

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
eIF3_N superfamily eIF3 subunit 6 N terminal domain; This is the N terminal domain of subunit 6 translation initiation... - 110.074 6.95E-29 18 - 157 superfamily 255368
PCI PCI domain; This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15). cl02111 65.7156 3.42E-13 316 - 412 specific 250589
PCI superfamily PCI domain; This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15). - 65.7156 3.42E-13 316 - 412 superfamily 261183

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_21485 PHATRDRAFT_21485 172037 66464 426559 Cre12.g498100.t1.2 AT3G57290.1 552766

KEGG

KEGG description KEGG Pathway
RNA transport map03013

GO Terms

Not available -

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