36614 PLN02536
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
36614 chr_11a PLN02536 127275 128731 - PLN02536

Synonyms

NCBI ID Ensembl Genomes exon ID
7444528 Thaps36614.1, Thaps36614.4, Thaps36614.3, Thaps36614.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0043

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0083
 0.43

Most Highly Correlated Transcripts

35164

acolac_lg
0.8747

37187

COG5354
0.8743

261047

Mito_carr
0.872

1888

hypothetical protein
0.8662

40200

TRX_reduct
0.8641

42621

HisS
0.8579

4524

DHQS
0.8531

268062

PRK14293
0.8524

24395

MIF4G_like superfamily
0.8512

24414

(MAP2) PTZ00053
0.8506

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DAP_epimerase Diaminopimelate epimerase; Diaminopimelate epimerase contains two domains of the same alpha/beta... cl19724 129.322 1.36E-36 43 - 161 specific 250792
DAP_epimerase superfamily Diaminopimelate epimerase; Diaminopimelate epimerase contains two domains of the same alpha/beta... - 129.322 1.36E-36 43 - 161 superfamily 268077
DAP_epimerase Diaminopimelate epimerase; Diaminopimelate epimerase contains two domains of the same alpha/beta... cl19724 129.322 1.36E-36 43 - 161 specific 250792
DAP_epimerase superfamily Diaminopimelate epimerase; Diaminopimelate epimerase contains two domains of the same alpha/beta... - 129.322 1.36E-36 43 - 161 superfamily 268077
PLN02536 diaminopimelate epimerase - 452.687 1.04E-160 56 - 324 multi-dom 178151

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_34582 PHATRDRAFT_34582 267911 309300 212438 Cre05.g237400.t1.2 AT3G53580.1 Not available

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0008837 GO:0009089 -

GO:0008837

diaminopimelate epimerase activity

Details: 
Catalysis of the reaction: LL-2,6-diaminopimelate = meso-2,6-diaminopimelate.
GO Category: 
MF

GO:0009089

lysine biosynthetic process via diaminopimelate

Details: 
The chemical reactions and pathways resulting in the formation of lysine, via the intermediate diaminopimelate.
GO Category: 
BP

Add comment

Log in to post comments