37187 COG5354
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
37187 chr_13 COG5354 280082 282314 + COG5354

Synonyms

NCBI ID Ensembl Genomes exon ID
7445725 Thaps37187.2, Thaps37187.1, Thaps37187.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0043

Most Highly Correlated Transcripts

42621

HisS
0.9137

23534

hypothetical protein
0.9087

40200

TRX_reduct
0.905

22627

hypothetical protein
0.9026

267979

HCO3_cotransp superfamily
0.8965

36321

hypothetical protein
0.8894

268443

SAICAR_synt_Sc
0.8884

5053

hypothetical protein
0.8839

261047

Mito_carr
0.8838

4524

DHQS
0.8818

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM_eIF3B RNA recognition motif in eukaryotic translation initiation factor 3 subunit B (eIF-3B) and similar... cl17169 108.817 4.00E-28 34 - 125 specific 240724
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 108.817 4.00E-28 34 - 125 superfamily 266524
COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] - 269.822 5.98E-81 164 - 695 multi-dom 227657

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_26975 PHATRDRAFT_26975 205041 68849 51173 Cre03.g190100.t1.1 AT5G25780.1 564272

KEGG

KEGG description KEGG Pathway
RNA transport map03013

GO Terms

GO:0003676 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

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