36686 2A43Thalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
36686	chr_11a	2A43	670613	671761	+	2A43

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444486	Thaps36686.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0278

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0003	0.47	11000 2

Most Highly Correlated Transcripts

bd1885 (bd1885) NA 0.8259	bd953 (bd953) NA 0.7744	bd955 (bd955) NA 0.7744	bd539 (bd539) Dynein_light superfamily 0.7602	bd616 (bd616) NA 0.7413	bd938 (bd938) PBP2_NikA_DppA_OppA_like superfamily 0.7366
11048 hypothetical protein 0.7303	20891 Cyt_b561_FRRS1_like 0.7158	11150 hypothetical protein 0.7004	bd1803 (bd1803) NA 0.6921

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PQ-loop		PQ loop repeat; Members of this family are all membrane bound proteins possessing a pair of repeats...	cl17546	61.0183	4.37E-12	126 - 185	specific	252442
PQ-loop superfamily		PQ loop repeat; Members of this family are all membrane bound proteins possessing a pair of repeats...	-	61.0183	4.37E-12	126 - 185	superfamily	266743
2A43		Lysosomal Cystine Transporter; [Transport and binding proteins, Amino acids, peptides and amines].	-	129.975	2.67E-35	124 - 364	multi-dom	130026

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATR_10247	PHATR_10247	204328	253294	73015	Not available	AT5G40670.1	521733

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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