36947 PBPb
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
36947 chr_12 PBPb 729390 732110 - PBPb

Synonyms

NCBI ID Ensembl Genomes exon ID
7447587 Thaps36947.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0317

Most Highly Correlated Transcripts

bd863

(bd863) NA
0.7745

bd655

(bd655) NA
0.7447

2956

hypothetical protein
0.7256

992

hypothetical protein
0.6894

4865

hypothetical protein
0.6851

262616

(MYB22)
0.6843

36597

trmE
0.673

2959

hypothetical protein
0.6646

990

hypothetical protein
0.6554

bd1112

(bd1112) NA
0.6428

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PBPb superfamily Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-... - 75.4874 2.99E-15 410 - 620 superfamily 238078
PBPb superfamily Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-... - 75.4874 2.99E-15 410 - 620 superfamily 238078
PBPb Bacterial periplasmic substrate-binding proteins; bacterial proteins, eukaryotic ones are in PBPe - 94.7025 1.16E-21 397 - 620 multi-dom 214497

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005215 GO:0006810 GO:0030288 -

GO:0005215

transporter activity

Details: 
Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
GO Category: 
MF

GO:0006810

transport

Details: 
The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0030288

outer membrane-bounded periplasmic space

Details: 
The region between the inner (cytoplasmic or plasma) membrane and outer membrane of organisms with two membranes such as Gram negative bacteria. These periplasmic spaces are relatively thick and contain a thin cell wall.
GO Category: 
CC

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