3837 UshA
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
3837 chr_3 UshA 1917959 1919806 + UshA

Synonyms

NCBI ID Ensembl Genomes exon ID
7445357 Thaps3837.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0214

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0136
 0.28

Most Highly Correlated Transcripts

5659

hypothetical protein
0.9268

bd393

(bd393) nst superfamily
0.9257

5584

P4Hc
0.9185

2086

zf-UBP
0.9047

20664

hypothetical protein
0.9041

264628

UxaC
0.9041

263558

Menin superfamily
0.9035

2575

RIO superfamily
0.9032

3842

hypothetical protein
0.9019

10050

DUF2233
0.8993

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MPP_superfamily superfamily metallophosphatase superfamily, metallophosphatase domain; Metallophosphatases (MPPs), also known... - 148.913 7.25E-41 8 - 318 superfamily 265413
5_nucleotid_C superfamily 5'-nucleotidase, C-terminal domain; 5'-nucleotidase, C-terminal domain. - 81.1632 7.57E-18 406 - 570 superfamily 251581
5_nucleotid_C superfamily 5'-nucleotidase, C-terminal domain; 5'-nucleotidase, C-terminal domain. - 81.1632 7.57E-18 406 - 570 superfamily 251581
UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [... - 169.18 1.04E-45 6 - 574 multi-dom 223808

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Cre03.g180600.t1.1 Not available 531827

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0016787 GO:0009166 GO:0008253 GO:0017175 -

GO:0016787

hydrolase activity

Details: 
Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
GO Category: 
MF

GO:0009166

nucleotide catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates).
GO Category: 
BP

GO:0008253

5'-nucleotidase activity

Details: 
Catalysis of the reaction: a 5'-ribonucleotide + H2O = a ribonucleoside + phosphate.
GO Category: 
MF

GO:0017175

NA

Details: 
NA
GO Category: 
NA

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