38715 PLN00120Thalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
38715	chr_22	PLN00120	366381	367368	-	PLN00120

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Thaps38715.2, Thaps38715.1, Thaps38715.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0022

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0129	0.19	270 640

Most Highly Correlated Transcripts

bd218 (bd218) Chloroa_b-bind superfamily 0.9904	270233 hypothetical protein 0.99	260392 (Lhcf2) fucoxanthin chlorophyll a/c protein 2 0.9797	bd1820 (bd1820) Fasciclin 0.978	39813 Chloroa_b-bind superfamily 0.9768	38583 (Lhcf1) PLN00120 0.9731
bd1160 (bd1160) Chloroa_b-bind superfamily 0.9729	42962 (Lhcf5) PLN00120 0.9713	38667 (Lhcf4) PLN00120 0.9635	5174 (Lhcf8) PLN00120 0.9607

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PLN00120		fucoxanthin-chlorophyll a-c binding protein; Provisional	cl02879	350.197	3.73E-123	14 - 214	specific	215063
Chloroa_b-bind superfamily		Chlorophyll A-B binding protein; Chlorophyll A-B binding protein.	-	350.197	3.73E-123	14 - 214	superfamily	261492

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0009765 GO:0016020 -

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