38933 AarFThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
38933	chr_1	AarF	92065	94122	+	AarF

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445484	Thaps38933.4, Thaps38933.1, Thaps38933.2, Thaps38933.5, Thaps38933.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0402

Most Highly Correlated Transcripts

6630 hypothetical protein 0.9293	1528 Evr1_Alr superfamily 0.9067	16961 S_TKc 0.9064	4260 WD40 0.8997	10860 Methyltransf_21 0.8942	6481 hypothetical protein 0.8932
1687 hypothetical protein 0.8929	24482 hypothetical protein 0.8927	22589 EMP24_GP25L 0.8918	261808 HA 0.8915

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
AarF		Predicted unusual protein kinase [General function prediction only]	cl17270	224.497	3.00E-66	102 - 492	specific	223733
APH_ChoK_like superfamily		Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family. The APH/ChoK...	-	224.497	3.00E-66	102 - 492	superfamily	266599

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	157151	282819	Not available	Not available	Not available	497640

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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