3956 FUN14Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
3956	chr_3	FUN14	2224227	2224544	+	FUN14

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443805	Thaps3956.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0120

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0047	0.45

Most Highly Correlated Transcripts

bd1959 (bd1959) NA 0.8637	8861 PRK11752 0.8426	36641 Aldolase_Class_I superfamily 0.8379	3328 hypothetical protein 0.8243	37377 AOX 0.819	38428 (AOX1_2) AOX 0.8148
25507 hypothetical protein 0.8003	21087 hypothetical protein 0.799	11569 hypothetical protein 0.7928	2996 hypothetical protein 0.7899

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
FUN14		FUN14 family; This family of short proteins are found in eukaryotes and some archaea. Although the...	cl01015	64.9987	5.82E-15	45 - 104	specific	252885
FUN14 superfamily		FUN14 family; This family of short proteins are found in eukaryotes and some archaea. Although the...	-	64.9987	5.82E-15	45 - 104	superfamily	260747

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_44796	PHATRDRAFT_44796	155025	291298	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments