4020 COG1741Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
4020	chr_3	COG1741	2369494	2370453	+	COG1741

Synonyms

NCBI ID	Ensembl Genomes exon ID
7452766	Thaps4020.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0141

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0261	0.35	400 120

Most Highly Correlated Transcripts

26991 GRX_GRXh_1_2_like 0.9243	37934 GRX_PICOT_like 0.9217	19977 TRX_family 0.909	16075 tpt 0.9046	9776 hypothetical protein 0.9019	3661 MMCE 0.9005
9115 DnaJ 0.8956	33024 cysteine_hydrolases superfamily 0.8923	22733 hypothetical protein 0.888	23082 hypothetical protein 0.8864

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
COG1741		Pirin-related protein [General function prediction only]	-	63.4786	6.86E-12	11 - 241	multi-dom	224655

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_37793	PHATRDRAFT_37793	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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