40463 class_II_aaRS-like_core superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
40463 chr_4 class_II_aaRS-like_core superfamily 1904147 1905437 + class_II_aaRS-like_core superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7451960 Thaps40463.3, Thaps40463.2, Thaps40463.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0066

Most Highly Correlated Transcripts

6028

NA
0.9182

264556

FBPase
0.9121

bd258

(bd258) HU
0.9112

21455

hypothetical protein
0.9079

bd1652

(bd1652) ABC_ATPase superfamily
0.9071

bd1765

(bd1765) NA
0.9055

35728

FtsZ_type1
0.904

bd1306

(bd1306) NA
0.9021

bd624

(bd624) Glyco_transf_34 superfamily
0.9018

9512

PTZ00168
0.8979

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
class_II_aaRS-like_core superfamily Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA... - 304.489 1.75E-101 4 - 335 superfamily 260313
tRNA-synt_2 tRNA synthetases class II (D, K and N); tRNA synthetases class II (D, K and N). - 207.468 1.53E-63 10 - 335 multi-dom 249633

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Aminoacyl-tRNA biosynthesis map00970

GO Terms

GO:0004815 GO:0005524 GO:0006422 GO:0004812 GO:0005737 GO:0006418 GO:0004816 -

GO:0004815

aspartate-tRNA ligase activity

Details: 
Catalysis of the reaction: ATP + L-aspartate + tRNA(Asp) = AMP + diphosphate + L-aspartyl-tRNA(Asp).
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006422

aspartyl-tRNA aminoacylation

Details: 
The process of coupling aspartate to aspartyl-tRNA, catalyzed by aspartyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
GO Category: 
BP

GO:0004812

aminoacyl-tRNA ligase activity

Details: 
Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO Category: 
MF

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0006418

tRNA aminoacylation for protein translation

Details: 
The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO Category: 
BP

GO:0004816

asparagine-tRNA ligase activity

Details: 
Catalysis of the reaction: L-asparagine + ATP + tRNA(Asn) = AMP + Asn-tRNA(Asn) + diphosphate + 2 H(+).
GO Category: 
MF

Add comment

Log in to post comments