40483 (PSA4) Ntn_hydrolase superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
40483 chr_4 (PSA4) Ntn_hydrolase superfamily 2025005 2026255 + Ntn_hydrolase superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7452212 Thaps40483.2, Thaps40483.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0199

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0098
 0.36

Most Highly Correlated Transcripts

26706

(PSA7) proteasome_alpha_type_7
0.9377

516

(RPT5) RPT1
0.9245

37861

(RPN3) Rpn3_C
0.9153

24560

PDI_a_family
0.9134

270222

0.912

11068

(PSA6) proteasome_alpha_type_6
0.908

40962

(RPN8) PLN03246
0.908

24495

(Tp_CCHH26) regulator [Rayko]
0.9014

33649

(PSB6) proteasome_beta_type_6
0.901

26868

(PSA3) proteasome_alpha_type_3
0.8995

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Ntn_hydrolase superfamily The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are... - 348.953 1.32E-121 3 - 235 superfamily 260443
PTZ00246 proteasome subunit alpha; Provisional - 324.113 2.85E-111 1 - 265 multi-dom 173491

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_24474 PHATRDRAFT_24474 190227 322509 Not available Cre10.g418100.t1.1 AT3G22110.1 286443

KEGG

KEGG description KEGG Pathway
Proteasome map03050

GO Terms

GO:0004175 GO:0005839 GO:0006511 GO:0004298 GO:0004299 -

GO:0004175

endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
GO Category: 
MF

GO:0005839

proteasome core complex

Details: 
A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex.
GO Category: 
CC

GO:0006511

ubiquitin-dependent protein catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
GO Category: 
BP

GO:0004298

threonine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
GO Category: 
MF

GO:0004299

NA

Details: 
NA
GO Category: 
NA

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