26706 (PSA7) proteasome_alpha_type_7
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
26706 chr_1 (PSA7) proteasome_alpha_type_7 1668997 1670046 + proteasome_alpha_type_7

Synonyms

NCBI ID Ensembl Genomes exon ID
7445148 Thaps26706.2, Thaps26706.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0199

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0098
 0.36

Most Highly Correlated Transcripts

270222

0.9756

11068

(PSA6) proteasome_alpha_type_6
0.9429

40483

(PSA4) Ntn_hydrolase superfamily
0.9377

516

(RPT5) RPT1
0.9282

37861

(RPN3) Rpn3_C
0.9207

26868

(PSA3) proteasome_alpha_type_3
0.9174

269624

TIM_phosphate_binding superfamily
0.9157

37118

FeThRed_B
0.9095

33649

(PSB6) proteasome_beta_type_6
0.904

40962

(RPN8) PLN03246
0.9013

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central... cl00467 377.089 4.22E-133 3 - 210 specific 239724
Ntn_hydrolase superfamily The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are... - 377.089 4.22E-133 3 - 210 superfamily 260443
PRK03996 proteasome subunit alpha; Provisional - 264.003 3.01E-88 1 - 232 multi-dom 235192

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_19004 PHATRDRAFT_19004 275540 317223 434211 Cre01.g030850.t1.2 AT3G51260.1 354799

KEGG

KEGG description KEGG Pathway
Proteasome map03050

GO Terms

GO:0004175 GO:0005839 GO:0006511 GO:0004298 GO:0004299 -

GO:0004175

endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
GO Category: 
MF

GO:0005839

proteasome core complex

Details: 
A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex.
GO Category: 
CC

GO:0006511

ubiquitin-dependent protein catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
GO Category: 
BP

GO:0004298

threonine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
GO Category: 
MF

GO:0004299

NA

Details: 
NA
GO Category: 
NA

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