40630 SPFH_like_u4
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
40630 chr_5 SPFH_like_u4 350882 352378 - SPFH_like_u4

Synonyms

NCBI ID Ensembl Genomes exon ID
7451733 Thaps40630.1, Thaps40630.2, Thaps40630.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0006

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0283
 0.35

Most Highly Correlated Transcripts

268160

SPFH_like_u4
0.9381

264807

ATP-synt_C superfamily
0.927

20740

hypothetical protein
0.8753

42320

PTZ00464 superfamily
0.863

261882

Thioredoxin_like superfamily
0.8627

9405

Cytochrome_b_N superfamily
0.8481

8058

hypothetical protein
0.8354

261641

NOX_Duox_like_FAD_NADP
0.8342

34211

Cytochrom_C superfamily
0.8341

270222

0.8287

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SPFH_like_u4 Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily; This model... cl19107 377.311 1.42E-131 18 - 282 specific 259805
SPFH_like superfamily core domain of the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily; This model... - 377.311 1.42E-131 18 - 282 superfamily 267460
PHB prohibitin homologues; prohibitin homologues - 68.456 1.60E-14 14 - 173 multi-dom 214581

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_11673 PHATRDRAFT_11673 205091 261376 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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