4104 PTR2
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
4104 chr_4 PTR2 182289 184968 + PTR2

Synonyms

NCBI ID Ensembl Genomes exon ID
7442047 Thaps4104.2, Thaps4104.4, Thaps4104.1, Thaps4104.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0438

Most Highly Correlated Transcripts

8768

hypothetical protein
0.8934

12836

EEP superfamily
0.8835

3266

Glu_cyclase_2 superfamily
0.8825

13448

Sec1
0.8758

25350

Methyltransf_24
0.873

25338

hypothetical protein
0.8728

269874

PKc_like superfamily
0.8726

23366

hypothetical protein
0.8682

40200

TRX_reduct
0.8674

25509

hypothetical protein
0.865

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] - 138.957 4.77E-35 178 - 647 multi-dom 225646

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_47148 PHATRDRAFT_47148 171976 321222 Not available Cre04.g224700.t1.2 AT2G02020.1 336489

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005215 GO:0006857 GO:0016020 -

GO:0005215

transporter activity

Details: 
Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
GO Category: 
MF

GO:0006857

oligopeptide transport

Details: 
The directed movement of oligopeptides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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