41636 PolY_Pol_IV_kappa
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
41636 chr_8 PolY_Pol_IV_kappa 1024232 1026351 - PolY_Pol_IV_kappa
NCBI ID Ensembl Genomes exon ID
7449870 Thaps41636.1, Thaps41636.3, Thaps41636.2
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0332
(MYB22)
0.9003
Adenylation_DNA_ligase_like superfamily
0.8994
hypothetical protein
0.8931
nuc_hydro superfamily
0.8929
PHD
0.8866
hypothetical protein
0.8834
MFS
0.8789
KU superfamily
0.8781
hypothetical protein
0.8773
(bd1877) NA
0.8764
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PolY_Pol_IV_kappa DNA Polymerase IV/Kappa; Pol IV, also known as Pol kappa, DinB, and Dpo4, is a translesion... cl12025 297.511 1.09E-94 141 - 496 specific 176459
PolY superfamily Y-family of DNA polymerases; Y-family DNA polymerases are a specialized subset of polymerases that... - 297.511 1.09E-94 141 - 496 superfamily 264514
DinP Nucleotidyltransferase/DNA polymerase involved in DNA repair [DNA replication, recombination, and... - 194.451 8.03E-56 139 - 506 multi-dom 223466
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_25495 PHATRDRAFT_25495 201565 157356 68295 Cre02.g079850.t1.1 AT1G49980.1 552269
KEGG description KEGG Pathway
Not available Not available
GO:0006281 GO:0003887 GO:0003889 GO:0003890 GO:0003891 GO:0003893 GO:0003894 GO:0003895 GO:0015999 GO:0016000 GO:0016448 GO:0016449 GO:0016450 GO:0016451 GO:0016452 GO:0019984 -

DNA repair

Details: 
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO Category: 
BP

DNA-directed DNA polymerase activity

Details: 
Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer.
GO Category: 
MF

NA

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NA
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NA

NA

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NA
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NA

NA

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NA
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NA

NA

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NA
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NA

NA

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NA
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NA

NA

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NA
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NA

NA

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NA
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NA

NA

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NA
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NA

NA

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NA
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NA

NA

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NA
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NA

NA

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NA
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NA

NA

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NA
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NA

NA

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NA
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NA

NA

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NA
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NA
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