10934 Adenylation_DNA_ligase_like superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
10934 chr_18 Adenylation_DNA_ligase_like superfamily 482869 485168 - Adenylation_DNA_ligase_like superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7442999 Thaps10934.2, Thaps10934.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0412

Most Highly Correlated Transcripts

5604

hypothetical protein
0.9466

21220

KU superfamily
0.9277

6922

hypothetical protein
0.9156

5653

hypothetical protein
0.9155

268825

COG5647
0.9124

22928

hypothetical protein
0.911

22265

hypothetical protein
0.9069

27813

Hid1 superfamily
0.9028

25451

AAA superfamily
0.9008

6459

Spc97_Spc98
0.8996

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Adenylation_DNA_ligase_like superfamily Adenylation domain of proteins similar to ATP-dependent polynucleotide ligases; ATP-dependent... - 93.462 1.88E-21 514 - 679 superfamily 264509

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
19301 Not available Not available Not available Not available Not available Not available 346745

KEGG

KEGG description KEGG Pathway
mRNA surveillance pathway map03015

GO Terms

GO:0004484 GO:0006370 GO:0006397 -

GO:0004484

mRNA guanylyltransferase activity

Details: 
Catalysis of the reaction: GTP + (5')pp-Pur-mRNA = diphosphate + G(5')ppp-Pur-mRNA; G(5')ppp-Pur-mRNA is mRNA containing a guanosine residue linked 5' through three phosphates to the 5' position of the terminal residue.
GO Category: 
MF

GO:0006370

7-methylguanosine mRNA capping

Details: 
Addition of the 7-methylguanosine cap to the 5' end of a nascent messenger RNA transcript.
GO Category: 
BP

GO:0006397

mRNA processing

Details: 
Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
GO Category: 
BP

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