42543 2OG-FeII_Oxy_2Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
42543	chr_15	2OG-FeII_Oxy_2	741836	743533	-	2OG-FeII_Oxy_2

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450291	Thaps42543.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0318

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0211	0.43	0.64 2

Most Highly Correlated Transcripts

35929 (MAPKKK) S_TKc 0.929	bd1939 (bd1939) NA 0.9256	264679 Syja_N 0.92	17935 DnaQ_like_exo superfamily 0.9178	34710 SNF2_N 0.912	32217 MA3 0.9084
25241 hypothetical protein 0.9083	15246 NhaP 0.9059	11371 hypothetical protein 0.9051	8259 hypothetical protein 0.9041

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
2OG-FeII_Oxy_2		2OG-Fe(II) oxygenase superfamily; 2OG-Fe(II) oxygenase superfamily.	cl17321	122.382	1.37E-32	13 - 219	specific	257851
2OG-FeII_Oxy_2 superfamily		2OG-Fe(II) oxygenase superfamily; 2OG-Fe(II) oxygenase superfamily.	-	122.382	1.37E-32	13 - 219	superfamily	266627

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
268713		Not available	152506	165148	207723	Not available	AT2G22260.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments