4340 S1_like superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
4340	chr_4	S1_like superfamily	791143	792235	-	S1_like superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7452653	Thaps4340.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0327

Most Highly Correlated Transcripts

bd1934 (bd1934) NA 0.946	bd690 (bd690) NA 0.9345	bd643 (bd643) NA 0.9165	19158 GRX_PICOT_like 0.9079	bd1946 (bd1946) NA 0.9075	11563 hypothetical protein 0.906
40200 TRX_reduct 0.9015	6997 hypothetical protein 0.9003	bd1806 (bd1806) AAT_I superfamily 0.9003	36995 LplA 0.8933

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
S1_like superfamily		S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated...	-	85.0036	9.66E-21	161 - 232	superfamily	263921
RRP4		RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation,...	-	81.6195	3.30E-18	161 - 351	multi-dom	224022

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_12921	PHATRDRAFT_12921	238904	283483	436227	Cre07.g319900.t1.1	AT4G32175.1	302978

KEGG

KEGG description	KEGG Pathway
RNA degradation	map03018

GO Terms

GO:0000175 GO:0004534 GO:0016896 -

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