5128 TPR
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
5128 chr_5 TPR 422339 423061 + TPR

Synonyms

NCBI ID Ensembl Genomes exon ID
7449682 Thaps5128.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0234

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0291
 0.48

Most Highly Correlated Transcripts

bd1803

(bd1803) NA
0.8004

bd1749

(bd1749) NA
0.7771

bd1747

(bd1747) NA
0.7691

33437

YjgF_YER057c_UK114_like_2
0.7628

6633

hypothetical protein
0.7587

9298

hypothetical protein
0.7586

11484

hypothetical protein
0.7555

bd1944

(bd1944) Glyco_hydro_79n superfamily
0.7525

1537

TBCC
0.7462

21388

hypothetical protein
0.7368

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 61.6272 9.58E-13 95 - 175 superfamily 238112
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 61.6272 9.58E-13 95 - 175 superfamily 238112

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
26071 Not available 164721 Not available Not available Cre12.g556100.t1.2 AT1G56440.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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