26071 (PSB_1) Ntn_hydrolase superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
26071 chr_1 (PSB_1) Ntn_hydrolase superfamily 1603050 1604311 + Ntn_hydrolase superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7451504 Thaps26071.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0221

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0184
 0.33

Most Highly Correlated Transcripts

bd1876

(bd1876) NatB_MDM20 superfamily
0.9479

263641

InfB
0.9344

264345

SpoU
0.9266

269925

AAA_12 superfamily
0.9176

35194

hypothetical protein
0.9133

27873

PLN02274
0.9118

42226

PLN03233
0.904

42213

PLN02286
0.9025

39540

Alpha_ANH_like_II
0.9003

7151

hypothetical protein
0.8995

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Ntn_hydrolase superfamily The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are... - 277.589 1.43E-92 162 - 351 superfamily 260443
20S_bact_beta proteasome, beta subunit, bacterial type; Members of this family are the beta subunit of the 20S... - 77.8255 4.56E-17 160 - 364 multi-dom 163402

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_5128 PHATRDRAFT_5128 210717 316089 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Proteasome map03050

GO Terms

GO:0004175 GO:0005839 GO:0006511 GO:0004298 GO:0004299 -

GO:0004175

endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
GO Category: 
MF

GO:0005839

proteasome core complex

Details: 
A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex.
GO Category: 
CC

GO:0006511

ubiquitin-dependent protein catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
GO Category: 
BP

GO:0004298

threonine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
GO Category: 
MF

GO:0004299

NA

Details: 
NA
GO Category: 
NA

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