6010 AP_muniscins_like_MHDThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
6010	chr_6	AP_muniscins_like_MHD	480664	482076	-	AP_muniscins_like_MHD

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448559	Thaps6010.2, Thaps6010.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0059

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0108	0.45	0.00031 42

Most Highly Correlated Transcripts

4108 hypothetical protein 0.9868	6028 NA 0.9302	268443 SAICAR_synt_Sc 0.9132	269004 PRTases_typeI 0.91	263147 (lipB_2) BPL_LplA_LipB superfamily 0.8968	267979 HCO3_cotransp superfamily 0.8957
262977 NA 0.8946	4900 hypothetical protein 0.8914	3202 hypothetical protein 0.8891	5996 N2227 superfamily 0.8869

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
AP_muniscins_like_MHD		Mu-homology domain (MHD) of muniscins adaptor proteins (AP) and similar proteins; This family...	cl10970	258.885	2.39E-83	171 - 435	specific	211368
AP_MHD_Cterm superfamily		C-terminal domain of adaptor protein (AP) complexes medium mu subunits and its homologs (MHD); This...	-	258.885	2.39E-83	171 - 435	superfamily	264154

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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