12025 CAP10 superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
12025	chr_23	CAP10 superfamily	181128	183984	-	CAP10 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448873	Thaps12025.6, Thaps12025.4, Thaps12025.2, Thaps12025.1, Thaps12025.5, Thaps12025.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0463

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0003	0.47	11000 2

Most Highly Correlated Transcripts

bd463 (bd463) Aa_trans superfamily 0.8674	bd1893 (bd1893) NA 0.8563	bd439 (bd439) POLBc_alpha 0.85	bd917 (bd917) NA 0.8466	bd856 (bd856) NA 0.8448	2530 hypothetical protein 0.8346
21820 hypothetical protein 0.8331	8217 hypothetical protein 0.8285	bd1095 (bd1095) NA 0.8229	3108 hypothetical protein 0.8226

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
CAP10 superfamily		Putative lipopolysaccharide-modifying enzyme; Putative lipopolysaccharide-modifying enzyme.	-	67.8322	9.94E-13	285 - 442	superfamily	214773

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_44629	PHATRDRAFT_44629	226500	157600	97459	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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