6234 DUF4239Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
6234	chr_6	DUF4239	1065407	1067613	+	DUF4239

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445972	Thaps6234.2, Thaps6234.1, Thaps6234.4, Thaps6234.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0208

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0281	0.33	5600 4000

Most Highly Correlated Transcripts

3071 NA 0.9166	268592 VDE superfamily 0.8987	8303 Glyco_trans_1_2 0.8919	8599 hypothetical protein 0.8857	8824 hypothetical protein 0.8843	5971 hypothetical protein 0.881
20405 GRX_GRXh_1_2_like 0.8708	7506 Uba3_RUB 0.8707	3322 hypothetical protein 0.8702	8414 NA 0.869

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
DUF4239 superfamily		Protein of unknown function (DUF4239); This family of proteins is functionally uncharacterized....	-	251.528	9.85E-79	245 - 467	superfamily	258258
DUF4239 superfamily		Protein of unknown function (DUF4239); This family of proteins is functionally uncharacterized....	-	251.528	9.85E-79	245 - 467	superfamily	258258

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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