6273 LRR_RI superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
6273	chr_6	LRR_RI superfamily	1166452	1169419	-	LRR_RI superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442383	Thaps6273.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0459

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0153	0.31	0.1 0.12

Most Highly Correlated Transcripts

269264 hypothetical protein 0.9176	20644 hypothetical protein 0.8825	22215 hypothetical protein 0.8682	23947 hypothetical protein 0.8658	23700 lysozyme_like superfamily 0.8548	23521 hypothetical protein 0.8547
4193 hypothetical protein 0.8543	21438 hypothetical protein 0.8507	21861 hypothetical protein 0.8423	268366 Glyco_18 0.8404

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
LRR_RI superfamily		Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue...	-	103.975	4.72E-24	178 - 396	superfamily	238064

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	259861	Not available	41471	Cre10.g438500.t1.2	AT1G10510.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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