6396 DabbThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
6396	chr_6	Dabb	1469616	1470074	+	Dabb

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442742	Thaps6396.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0141

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0103	0.42	29 19

Most Highly Correlated Transcripts

bd1841 (bd1841) CAP10 superfamily 0.9099	bd415 (bd415) arom_aa_hydroxylase superfamily 0.9062	bd1839 (bd1839) NA 0.8993	6373 hypothetical protein 0.8963	18841 RRM_RBM8 0.8931	9339 hypothetical protein 0.8879
bd1756 (bd1756) NA 0.8856	33024 cysteine_hydrolases superfamily 0.8848	17242 SPFH_like_u4 0.8842	9115 DnaJ 0.8833

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Dabb		Stress responsive A/B Barrel Domain; The function of this domain is unknown, but it is upregulated...	cl17744	85.8018	3.83E-22	45 - 142	specific	214884
Dabb superfamily		Stress responsive A/B Barrel Domain; The function of this family is unknown, but it is upregulated...	-	85.8018	3.83E-22	45 - 142	superfamily	266806

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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