Genes
Species: Geobacter sulfurreducens
transcription factors: 156
| Name | Common name | Type | Gene ID | Chromosome | Start | End | Strand | Description | TF |
|---|---|---|---|---|---|---|---|---|---|
| GSU0013 | GSU0013 | CDS | - | chromosome | 21747 | 22175 | - | transcriptional regulator, MarR family (VIMSS) | True |
| GSU0018 | GSU0018 | CDS | - | chromosome | 28904 | 30340 | - | transcriptional regulator, GntR family/aminotransferase class-I (VIMSS) | True |
| GSU0031 | hrcA | CDS | - | chromosome | 40721 | 41749 | + | heat-inducible transcription repressor HrcA (NCBI) | True |
| GSU0041 | lexA-1 | CDS | - | chromosome | 51143 | 51748 | + | LexA repressor (NCBI) | True |
| GSU0049 | GSU0049 | CDS | - | chromosome | 64130 | 65092 | + | conserved hypothetical protein (VIMSS) | True |
| GSU0063 | GSU0063 | CDS | - | chromosome | 79477 | 79698 | + | conserved hypothetical protein (VIMSS) | True |
| GSU0079 | GSU0079 | CDS | - | chromosome | 91135 | 91725 | - | transcriptional regulator, Cro/CI family (VIMSS) | True |
| GSU0107 | spo0J | CDS | - | chromosome | 122567 | 123376 | + | parB-like domain protein (NCBI) | True |
| GSU0147 | recX | CDS | - | chromosome | 163258 | 163737 | + | regulatory protein RecX (NCBI) | True |
| GSU0164 | GSU0164 | CDS | - | chromosome | 180981 | 181343 | + | conserved hypothetical protein (VIMSS) | True |
| GSU0175 | GSU0175 | CDS | - | chromosome | 191349 | 191960 | + | transcriptional regulator, TetR family (VIMSS) | True |
| GSU0178 | GSU0178 | CDS | - | chromosome | 193093 | 193437 | - | conserved hypothetical protein (VIMSS) | True |
| GSU0187 | GSU0187 | CDS | - | chromosome | 200953 | 201300 | - | conserved hypothetical protein (VIMSS) | True |
| GSU0191 | GSU0191 | CDS | - | chromosome | 203766 | 203966 | - | cold-shock domain family protein (VIMSS) | True |
| GSU0205 | GSU0205 | CDS | - | chromosome | 215676 | 216302 | + | transcriptional regulator, TetR family (VIMSS) | True |
| GSU0207 | GSU0207 | CDS | - | chromosome | 217397 | 217597 | + | cold-shock domain family protein (VIMSS) | True |
| GSU0254 | GSU0254 | CDS | - | chromosome | 262990 | 263637 | + | DNA-binding response regulator, LuxR family (VIMSS) | True |
| GSU0266 | GSU0266 | CDS | - | chromosome | 273393 | 274316 | + | transcriptional regulator, LysR family (VIMSS) | True |
| GSU0267 | GSU0267 | CDS | - | chromosome | 274646 | 275392 | + | transcriptional regulator, GntR family (VIMSS) | True |
| GSU0280 | GSU0280 | CDS | - | chromosome | 307916 | 309268 | - | transcriptional regulator, Fis family (VIMSS) | True |
| GSU0284 | dksA | CDS | - | chromosome | 313467 | 313823 | - | dnaK suppressor protein (NCBI) | True |
| GSU0300 | GSU0300 | CDS | - | chromosome | 329817 | 330251 | + | sigma-54 dependent DNA-binding response regulator, interruption-N (VIMSS) | True |
| GSU0359 | GSU0359 | CDS | - | chromosome | 389808 | 391184 | - | sensory box protein/sigma-54 dependent transcriptional regulator (VIMSS) | True |
| GSU0366 | GSU0366 | CDS | - | chromosome | 397904 | 398824 | + | transcriptional regulator, putative (VIMSS) | True |
| GSU0372 | GSU0372 | CDS | - | chromosome | 406003 | 407388 | - | sigma-54 dependent DNA-binding response regulator (VIMSS) | True |
| GSU0399 | GSU0399 | CDS | - | chromosome | 430266 | 430541 | + | transcriptional regulator, ArsR family (VIMSS) | True |
| GSU0470 | GSU0470 | CDS | - | chromosome | 499286 | 500647 | - | sigma-54 dependent response regulator (VIMSS) | True |
| GSU0473 | GSU0473 | CDS | - | chromosome | 502666 | 503670 | + | transcriptional regulator, putative (VIMSS) | True |
| GSU0514 | GSU0514 | CDS | - | chromosome | 548065 | 548847 | - | transcriptional regulator, IclR family (VIMSS) | True |
| GSU0534 | GSU0534 | CDS | - | chromosome | 566814 | 567278 | + | RrF2 family protein (VIMSS) | True |
| GSU0551 | GSU0551 | CDS | - | chromosome | 584149 | 584490 | + | conserved hypothetical protein (VIMSS) | True |
| GSU0581 | GSU0581 | CDS | - | chromosome | 613202 | 613402 | + | cold-shock domain family protein (VIMSS) | True |
| GSU0598 | GSU0598 | CDS | - | chromosome | 628853 | 630265 | + | sigma-54 dependent DNA-binding response regulator (VIMSS) | True |
| GSU0625 | GSU0625 | CDS | - | chromosome | 662525 | 663163 | + | hypothetical protein (VIMSS) | True |
| GSU0655 | rpoH | CDS | - | chromosome | 690757 | 691611 | - | RNA polymerase sigma-32 factor (NCBI) | True |
| GSU0682 | GSU0682 | CDS | - | chromosome | 718009 | 718656 | + | DNA-binding response regulator, LuxR family (VIMSS) | True |
| GSU0721 | GSU0721 | CDS | - | chromosome | 771279 | 771824 | + | RNA polymerase sigma-E factor, putative (NCBI) | True |
| GSU0732 | GSU0732 | CDS | - | chromosome | 778861 | 779289 | - | nucleoside diphosphate kinase regulator protein, putative (VIMSS) | True |
| GSU0735 | GSU0735 | CDS | - | chromosome | 782544 | 783221 | - | PTS system IIA component, fructose subfamily (VIMSS) | True |
| GSU0736 | GSU0736 | CDS | - | chromosome | 783322 | 783660 | - | pemK protein, putative (VIMSS) | True |
| GSU0770 | GSU0770 | CDS | - | chromosome | 826391 | 826981 | + | transcriptional regulator, TetR family (VIMSS) | True |
| GSU0776 | GSU0776 | CDS | - | chromosome | 833267 | 834664 | - | sigma-54 dependent DNA-binding response regulator (VIMSS) | True |
| GSU0811 | ntrX | CDS | - | chromosome | 869490 | 870860 | - | nitrogen regulation protein NtrX (NCBI) | True |
| GSU0812 | GSU0812 | CDS | - | chromosome | 870871 | 873117 | - | nitrogen regulation protein NtrY, putative (VIMSS) | True |
| GSU0836 | GSU0836 | CDS | - | chromosome | 895653 | 896060 | - | nucleoside diphosphate kinase regulator protein, putative (VIMSS) | True |
| GSU0896 | tldD | CDS | - | chromosome | 960231 | 961613 | - | tldD protein (NCBI) | True |
| GSU0951 | GSU0951 | CDS | - | chromosome | 1023807 | 1024397 | - | transcriptional regulator, TetR family (VIMSS) | True |
| GSU0963 | ntrC | CDS | - | chromosome | 1038168 | 1039571 | + | sigma-54 dependent DNA-binding response regulator (NCBI) | True |
| GSU1003 | ntrC | CDS | - | chromosome | 1082803 | 1084248 | - | nitrogen regulation protein NR(I) (NCBI) | True |
| GSU1013 | GSU1013 | CDS | - | chromosome | 1094975 | 1095844 | + | chemotaxis MotB protein, putative (VIMSS) | True |
| GSU1039 | GSU1039 | CDS | - | chromosome | 1125639 | 1127339 | + | sigma-54 dependent DNA-binding response regulator (VIMSS) | True |
| GSU1072 | GSU1072 | CDS | - | chromosome | 1161236 | 1162006 | - | transcriptional regulator, IclR family (VIMSS) | True |
| GSU1095 | phoU | CDS | - | chromosome | 1180477 | 1181163 | - | phosphate transport system regulatory protein PhoU (NCBI) | True |
| GSU1115 | GSU1115 | CDS | - | chromosome | 1200527 | 1201381 | + | transcriptional regulator, putative (VIMSS) | True |
| GSU1129 | GSU1129 | CDS | - | chromosome | 1212287 | 1213648 | - | sigma-54 dependent DNA-binding response regulator (VIMSS) | True |
| GSU1201 | greB | CDS | - | chromosome | 1304794 | 1305279 | + | transcription elongation factor GreB (NCBI) | True |
| GSU1218 | GSU1218 | CDS | - | chromosome | 1321804 | 1321989 | + | conserved hypothetical protein (VIMSS) | True |
| GSU1250 | GSU1250 | CDS | - | chromosome | 1352057 | 1353466 | + | sigma-54 dependent DNA-binding response regulator (VIMSS) | True |
| GSU1268 | GSU1268 | CDS | - | chromosome | 1379856 | 1380863 | - | transcriptional regulator, LysR family (VIMSS) | True |
| GSU1270 | pyrR | CDS | - | chromosome | 1385037 | 1385570 | + | pyrimidine operon regulatory protein PyrR (NCBI) | True |
| GSU1277 | greA | CDS | - | chromosome | 1393780 | 1394256 | + | transcription elongation factor GreA (NCBI) | True |
| GSU1293 | GSU1293 | CDS | - | chromosome | 1409987 | 1410637 | + | DNA-binding response regulator, LuxR family (VIMSS) | True |
| GSU1320 | GSU1320 | CDS | - | chromosome | 1446088 | 1447470 | + | sigma-54 dependent DNA-binding response regulator (VIMSS) | True |
| GSU1342 | GSU1342 | CDS | - | chromosome | 1468634 | 1469542 | - | transcriptional regulator, LysR family (VIMSS) | True |
| GSU1345 | GSU1345 | CDS | - | chromosome | 1472572 | 1473033 | + | RrF2 family protein (VIMSS) | True |
| GSU1379 | fur | CDS | - | chromosome | 1507920 | 1508351 | + | ferric uptake regulation protein (Dmitry Rodionov) | True |
| GSU1382 | GSU1382 | CDS | - | chromosome | 1510799 | 1511443 | + | iron-dependent repressor, putative (VIMSS) | True |
| GSU1410 | GSU1410 | CDS | - | chromosome | 1548670 | 1549026 | - | conserved hypothetical protein (VIMSS) | True |
| GSU1419 | GSU1419 | CDS | - | chromosome | 1556494 | 1556922 | + | transcriptional regulator, Cro/CI family (VIMSS) | True |
| GSU1428 | GSU1428 | DUMMY | - | chromosome | 0 | 0 | + | None | True |
| GSU1483 | GSU1483 | CDS | - | chromosome | 1623741 | 1624190 | - | transcriptional regulator, MarR family (VIMSS) | True |
| GSU1495 | GSU1495 | CDS | - | chromosome | 1640718 | 1642094 | + | sigma-54 dependent DNA-binding response regulator (VIMSS) | True |
| GSU1522 | GSU1522 | CDS | - | chromosome | 1669226 | 1669579 | + | transcriptional regulator, putative (VIMSS) | True |
| GSU1525 | rpoD | CDS | - | chromosome | 1671264 | 1672250 | + | RNA polymerase sigma-70 factor family (NCBI) | True |
| GSU1542 | GSU1542 | CDS | - | chromosome | 1696510 | 1696803 | - | transcriptional regulator, Cro/CI family (VIMSS) | True |
| GSU1569 | GSU1569 | CDS | - | chromosome | 1722264 | 1722479 | + | transcriptional regulator, CopG family (VIMSS) | True |
| GSU1586 | nusA | CDS | - | chromosome | 1738694 | 1739851 | + | N utilization substance protein A (NCBI) | True |
| GSU1617 | lexA-2 | CDS | - | chromosome | 1770881 | 1771492 | - | LexA repressor (NCBI) | True |
| GSU1626 | GSU1626 | CDS | - | chromosome | 1780852 | 1781577 | + | transcriptional regulator, GntR family (VIMSS) | True |
| GSU1639 | GSU1639 | CDS | - | chromosome | 1797963 | 1798373 | + | Rrf2 family protein (NCBI) | True |
| GSU1653 | GSU1653 | CDS | - | chromosome | 1810491 | 1811927 | + | sigma-54 dependent DNA-binding response regulator (VIMSS) | True |
| GSU1687 | GSU1687 | CDS | - | chromosome | 1846792 | 1847244 | + | ATP cone domain protein (NCBI) | True |
| GSU1692 | nusB | CDS | - | chromosome | 1850731 | 1851147 | + | N utilization substance protein B (NCBI) | True |
| GSU1727 | GSU1727 | CDS | - | chromosome | 1892787 | 1893179 | + | dnaK suppressor, putative (VIMSS) | True |
| GSU1831 | GSU1831 | CDS | - | chromosome | 1997567 | 1998154 | - | conserved hypothetical protein TIGR00281 (VIMSS) | True |
| GSU1863 | GSU1863 | CDS | - | chromosome | 2039953 | 2040456 | + | transcriptional regulator, Ros/MucR family (VIMSS) | True |
| GSU1887 | rpoN | CDS | - | chromosome | 2065151 | 2066596 | - | RNA polymerase sigma-54 factor (NCBI) | True |
| GSU1905 | GSU1905 | CDS | - | chromosome | 2083466 | 2083666 | + | cold shock domain family protein (VIMSS) | True |
| GSU1934 | GSU1934 | CDS | - | chromosome | 2115919 | 2116686 | - | transcriptional activator, putative, Baf family (VIMSS) | True |
| GSU1940 | GSU1940 | CDS | - | chromosome | 2123258 | 2124625 | - | sigma-54 dependent DNA-binding response regulator (VIMSS) | True |
| GSU1989 | GSU1989 | CDS | - | chromosome | 2182011 | 2183345 | - | sigma-54 dependent DNA-binding response regulator (VIMSS) | True |
| GSU1992 | GSU1992 | CDS | - | chromosome | 2185291 | 2185971 | - | transcriptional regulator, Crp/Fnr family (VIMSS) | True |
| GSU2033 | GSU2033 | CDS | - | chromosome | 2225471 | 2225845 | - | transcriptional regulator, putative (VIMSS) | True |
| GSU2041 | GSU2041 | CDS | - | chromosome | 2235760 | 2237127 | - | sigma-54 dependent DNA-binding response regulator (VIMSS) | True |
| GSU2113 | GSU2113 | CDS | - | chromosome | 2332015 | 2332446 | + | transcriptional regulator, putative (VIMSS) | True |
| GSU2149 | GSU2149 | CDS | - | chromosome | 2366388 | 2366762 | - | transcriptional regulator, ArsR family (VIMSS) | True |
| GSU2177 | GSU2177 | CDS | - | chromosome | 2387321 | 2387878 | + | hypothetical protein (VIMSS) | True |
| GSU2185 | GSU2185 | CDS | - | chromosome | 2395116 | 2395424 | - | flgM family protein (VIMSS) | True |
| GSU2202 | GSU2202 | CDS | - | chromosome | 2416007 | 2416930 | - | transcriptional regulator, LysR family (VIMSS) | True |
| GSU2237 | rpoZ | CDS | - | chromosome | 2452823 | 2453032 | - | DNA-directed RNA polymerase, omega subunit (NCBI) | True |
| GSU2262 | degT | CDS | - | chromosome | 2477971 | 2479062 | - | pleiotropic regulatory protein (NCBI) | True |
| GSU2354 | GSU2354 | CDS | - | chromosome | 2574831 | 2575607 | - | transcriptional regulator, IclR family (VIMSS) | True |
| GSU2362 | GSU2362 | CDS | - | chromosome | 2588553 | 2589074 | - | transcriptional regulator, MarR family (VIMSS) | True |
| GSU2506 | GSU2506 | CDS | - | chromosome | 2762042 | 2763736 | - | sensory box protein/sigma-54 dependent DNA-binding response regulator (NCBI) | True |
| GSU2520 | GSU2520 | CDS | - | chromosome | 2778846 | 2779607 | - | (R)-2-hydroxyglutaryl-CoA dehydratase activator (VIMSS) | True |
| GSU2523 | GSU2523 | CDS | - | chromosome | 2780905 | 2781801 | + | transcriptional regulator, LysR family (VIMSS) | True |
| GSU2524 | GSU2524 | CDS | - | chromosome | 2781835 | 2783229 | + | sigma-54 dependent DNA-binding response regulator (VIMSS) | True |
| GSU2540 | GSU2540 | CDS | - | chromosome | 2804108 | 2804653 | - | transcriptional regulator, Cro/CI family (VIMSS) | True |
| GSU2571 | GSU2571 | CDS | - | chromosome | 2833441 | 2833878 | - | RrF2 family protein (VIMSS) | True |
| GSU2581 | GSU2581 | CDS | - | chromosome | 2842690 | 2844060 | - | sigma-54 dependent transcriptional regulator (VIMSS) | True |
| GSU2587 | GSU2587 | CDS | - | chromosome | 2850867 | 2851295 | + | transcriptional regulator, MarR family (VIMSS) | True |
| GSU2625 | GSU2625 | CDS | - | chromosome | 2897198 | 2897476 | + | transcriptional regulator, ArsR family (NCBI) | True |
| GSU2666 | GSU2666 | CDS | - | chromosome | 2940336 | 2940977 | - | transcriptional regulator, TetR family (VIMSS) | True |
| GSU2670 | GSU2670 | CDS | - | chromosome | 2944089 | 2945381 | - | transcriptional regulator, LuxR family (VIMSS) | True |
| GSU2698 | GSU2698 | CDS | - | chromosome | 2978501 | 2979112 | - | transcriptional regulator, TetR family (VIMSS) | True |
| GSU2716 | sfsA | CDS | - | chromosome | 2993769 | 2994467 | + | sugar fermentation stimulation protein (NCBI) | True |
| GSU2735 | GSU2735 | CDS | - | chromosome | 3012258 | 3012863 | - | transcriptional regulator, TetR family (NCBI) | True |
| GSU2741 | GSU2741 | CDS | - | chromosome | 3017725 | 3018372 | - | transcriptional regulator, TetR family (VIMSS) | True |
| GSU2753 | GSU2753 | CDS | - | chromosome | 3027724 | 3029130 | - | sigma-54 dependent DNA-binding response regulator (VIMSS) | True |
| GSU2771 | GSU2771 | CDS | - | chromosome | 3051489 | 3052445 | - | conserved hypothetical protein (VIMSS) | True |
| GSU2779 | GSU2779 | CDS | - | chromosome | 3058112 | 3058669 | + | transcriptional regulator, MerR family (VIMSS) | True |
| GSU2787 | GSU2787 | CDS | - | chromosome | 3066335 | 3067252 | + | transcriptional regulator, LysR family (VIMSS) | True |
| GSU2809 | GSU2809 | CDS | - | chromosome | 3088861 | 3089319 | + | transcriptional regulator, Fur family (VIMSS) | True |
| GSU2817 | GSU2817 | CDS | - | chromosome | 3098717 | 3099607 | - | transcriptional regulator, LysR family (VIMSS) | True |
| GSU2831 | rpoA | CDS | - | chromosome | 3115118 | 3116140 | - | DNA-directed RNA polymerase, alpha subunit (NCBI) | True |
| GSU2868 | nusG | CDS | - | chromosome | 3144778 | 3145305 | - | transcription antitermination protein NusG (NCBI) | True |
| GSU2915 | GSU2915 | CDS | - | chromosome | 3213944 | 3215317 | - | sigma-54 dependent DNA-binding response regulator (VIMSS) | True |
| GSU2926 | GSU2926 | CDS | - | chromosome | 3225393 | 3226154 | + | (R)-2-hydroxyglutaryl-CoA dehydratase activator, putative (VIMSS) | True |
| GSU2941 | GSU2941 | CDS | - | chromosome | 3237885 | 3238820 | + | transcriptional regulator, LysR family (VIMSS) | True |
| GSU2945 | GSU2945 | CDS | - | chromosome | 3242763 | 3243509 | + | (R)-2-hydroxyglutaryl-CoA dehydratase activator, putative (VIMSS) | True |
| GSU2952 | GSU2952 | CDS | - | chromosome | 3251800 | 3252141 | + | transcriptional regulator, ArsR family (VIMSS) | True |
| GSU2964 | modE | CDS | - | chromosome | 3260255 | 3261064 | - | molybdenum transport regulatory protein ModE (NCBI) | True |
| GSU2980 | GSU2980 | CDS | - | chromosome | 3271194 | 3271613 | - | transcriptional regulator, CopG family (VIMSS) | True |
| GSU2987 | Zur | CDS | - | chromosome | 3278158 | 3278577 | - | Zinc uptake transcriptional regulator (Fur family) (Dmitry Rodionov) | True |
| GSU3041 | csrA | CDS | - | chromosome | 3346282 | 3346521 | - | carbon storage regulator (NCBI) | True |
| GSU3045 | flgM | CDS | - | chromosome | 3349396 | 3349683 | - | negative regulator of flagellin synthesis FlgM (NCBI) | True |
| GSU3053 | fliA | CDS | - | chromosome | 3354638 | 3355390 | - | RNA polymerase sigma factor for flagellar operon (NCBI) | True |
| GSU3060 | GSU3060 | CDS | - | chromosome | 3363768 | 3364379 | + | transcriptional regulator, TetR family (VIMSS) | True |
| GSU3087 | GSU3087 | CDS | - | chromosome | 3392958 | 3393785 | - | transcriptional regulator, Sir2 family (VIMSS) | True |
| GSU3089 | rpoD | CDS | - | chromosome | 3394412 | 3396145 | - | RNA polymerase sigma factor RpoD (NCBI) | True |
| GSU3108 | rho | CDS | - | chromosome | 3410940 | 3412187 | - | transcription termination factor Rho (NCBI) | True |
| GSU3109 | GSU3109 | CDS | - | chromosome | 3412645 | 3413418 | + | transcriptional regulator, IclR family (NCBI) | True |
| GSU3127 | GSU3127 | CDS | - | chromosome | 3427883 | 3428821 | + | transcriptional regulator, AraC family (VIMSS) | True |
| GSU3206 | dksA | CDS | - | chromosome | 3512703 | 3513122 | + | dnaK suppressor protein, putative (NCBI) | True |
| GSU3217 | GSU3217 | CDS | - | chromosome | 3522478 | 3523983 | + | sigma-54 dependent DNA-binding response regulator (VIMSS) | True |
| GSU3229 | GSU3229 | CDS | - | chromosome | 3543991 | 3544680 | - | DNA-binding response regulator, LuxR family (VIMSS) | True |
| GSU3292 | GSU3292 | CDS | - | chromosome | 3611697 | 3612062 | + | transcriptional regulator, Fur family (VIMSS) | True |
| GSU3298 | GSU3298 | CDS | - | chromosome | 3618530 | 3619093 | + | transcriptional regulator, Cro/CI family (VIMSS) | True |
| GSU3324 | GSU3324 | CDS | - | chromosome | 3651999 | 3652637 | - | transcriptional regulator, Cro/CI family (VIMSS) | True |
| GSU3363 | GSU3363 | CDS | - | chromosome | 3694820 | 3697111 | + | sigma-54 dependent transcriptional regulator, Fis family (VIMSS) | True |
| GSU3370 | GSU3370 | CDS | - | chromosome | 3703818 | 3704525 | - | transcriptional regulator, GntR family (VIMSS) | True |
| GSU3387 | GSU3387 | CDS | - | chromosome | 3725285 | 3726118 | - | transcriptional regulator, AraC/XylS family (VIMSS) | True |
| GSU3396 | GSU3396 | CDS | - | chromosome | 3735764 | 3736480 | + | transcriptional regulator, GntR family (VIMSS) | True |
| GSU3418 | GSU3418 | CDS | - | chromosome | 3761065 | 3762537 | - | sigma-54 dependent DNA-binding response regulator (VIMSS) | True |
| GSU3421 | GSU3421 | CDS | - | chromosome | 3766220 | 3766945 | - | transcriptional regulator, Crp/Fnr family (VIMSS) | True |
| GSU3457 | GSU3457 | CDS | - | chromosome | 3803900 | 3804457 | - | glycine cleavage system transcriptional repressor, putative (VIMSS) | True |
