PITA_106 megaCluster: 11 Residual: 0.14 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
PITA_106	11	0.14	15	0	0.95429	0

Members

Displaying 1 - 17 of 17

12531 cell division cycle 25B Details for RP23-387C21.1 - cell division cycle 25B GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12531 Tuberculist Genomic Region	13631 eukaryotic elongation factor-2 kinase Details for - - eukaryotic elongation factor-2 kinase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 13631 Tuberculist Genomic Region
140500 ArfGAP with coiled-coil, ankyrin repeat and PH domains 3 Details for RP23-242K15.11-002 - ArfGAP with coiled-coil, ankyrin repeat and PH domains 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 140500 Tuberculist Genomic Region	14211 structural maintenance of chromosomes 2 Details for RP23-122I3.3 - structural maintenance of chromosomes 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14211 Tuberculist Genomic Region
240641 kinesin family member 20B Details for - - kinesin family member 20B GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 240641 Tuberculist Genomic Region	381306 cDNA sequence BC055324 Details for - - cDNA sequence BC055324 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 381306 Tuberculist Genomic Region
56794 2-hydroxyacyl-CoA lyase 1 Details for - - 2-hydroxyacyl-CoA lyase 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 56794 Tuberculist Genomic Region	66934 DSN1, MIND kinetochore complex component, homolog (S. cerevisiae) Details for RP23-430P1.2 - DSN1, MIND kinetochore complex component, homolog (S. cerevisiae) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66934 Tuberculist Genomic Region
67141 F-box protein 5 Details for - - F-box protein 5 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67141 Tuberculist Genomic Region	68298 non-SMC condensin I complex, subunit D2 Details for - - non-SMC condensin I complex, subunit D2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68298 Tuberculist Genomic Region
73166 transmembrane 7 superfamily member 2 Details for - - transmembrane 7 superfamily member 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 73166 Tuberculist Genomic Region	74470 centrosomal protein 72 Details for - - centrosomal protein 72 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 74470 Tuberculist Genomic Region
20133 ribonucleotide reductase M1 Details for - - ribonucleotide reductase M1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20133 Tuberculist Genomic Region	209334 Gen homolog 1, endonuclease (Drosophila) Details for - - Gen homolog 1, endonuclease (Drosophila) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 209334 Tuberculist Genomic Region
231123 HAUS augmin-like complex, subunit 3 Details for - - HAUS augmin-like complex, subunit 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 231123 Tuberculist Genomic Region	26934 Rac GTPase-activating protein 1 Details for - - Rac GTPase-activating protein 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 26934 Tuberculist Genomic Region
56150 MAD2 mitotic arrest deficient-like 1 Details for - - MAD2 mitotic arrest deficient-like 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 56150 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
SP1_C2H2_DBD_monomeric_11_1, V_SP1_Q6_M00196, SP3_C2H2_DBD_monomeric_11_1, V_SP4_Q5_M01273, V_SP1_Q2_01_M00933, V_SP1_Q4_01_M00932	1, 1, 1, 1, 1, 1	0

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
0.002	GCGGGGGCGGGG	Egr1_MA0162.1, V$EGR1_02_M01972, V$SP1SP3_Q4_M01219, V$NGFIC_01_M00244, V$EGR1_01_M00243, V$EGR_Q6_M00807, V$MOVOB_01_M01104, V$EGR2_01_M00246, V$ETF_Q6_M00695, V$CACBINDINGPROTEIN_Q6_M00720, V$EGR3_01_M00245, V$RNF96_01_M01199, V$FKLF_Q5_M01837, EGR2_C2H2_full_monomeric_15_1, EGR4_C2H2_DBD_monomeric_16_2, EGR2_C2H2_DBD_monomeric_11_1, Egr3_C2H2_DBD_monomeric_15_1, EGR1_C2H2_full_monomeric_14_1, ZNF740_C2H2_full_monomeric_10_1	1100	AAATTCAAACA	NA

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
1.6	GCGACG	Sp100.2	1.77	ACTMCGCG	NA

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.98	CTTNGGGG	NA	NA		NA	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
NA

3p UTR TargetScan

miRNAs	percTargets	pValue
mmu-miR-539-3p	0.428571	0.000014

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