PITA_157 megaCluster: 1 Residual: 0.17

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_157 1 0.17 15 0 0.943594 0

Members

Displaying 1 - 23 of 23
100504453 predicted gene, 20236

Details for - - predicted gene, 20236

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100504453

Tuberculist Genomic Region

11796 baculoviral IAP repeat-containing 3

Details for RP24-318P17.1 - baculoviral IAP repeat-containing 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11796

Tuberculist Genomic Region

12870 ceruloplasmin

Details for - - ceruloplasmin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12870

Tuberculist Genomic Region

20310 chemokine (C-X-C motif) ligand 2

Details for - - chemokine (C-X-C motif) ligand 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20310

Tuberculist Genomic Region

215257 interleukin 1 family, member 9

Details for RP23-176J12.3 - interleukin 1 family, member 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 215257

Tuberculist Genomic Region

21929 tumor necrosis factor, alpha-induced protein 3

Details for - - tumor necrosis factor, alpha-induced protein 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21929

Tuberculist Genomic Region

66205 CD302 antigen

Details for RP23-10L17.2 - CD302 antigen

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66205

Tuberculist Genomic Region

70675 valosin containing protein (p97)/p47 complex interacting protein 1

Details for - - valosin containing protein (p97)/p47 complex interacting protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70675

Tuberculist Genomic Region

71934 carbonic anhydrase 13

Details for - - carbonic anhydrase 13

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71934

Tuberculist Genomic Region

73158 La ribonucleoprotein domain family, member 1

Details for RP23-293I3.7 - La ribonucleoprotein domain family, member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 73158

Tuberculist Genomic Region

75379 RIKEN cDNA 4930599N23 gene

Details for - - RIKEN cDNA 4930599N23 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75379

Tuberculist Genomic Region

76800 ubiquitin specific peptidase 42

Details for - - ubiquitin specific peptidase 42

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76800

Tuberculist Genomic Region

100040233 predicted gene 10334

Details for - - predicted gene 10334

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100040233

Tuberculist Genomic Region

100504727 expressed sequence BE692007

Details for - - expressed sequence BE692007

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100504727

Tuberculist Genomic Region

14674 guanine nucleotide binding protein, alpha 13

Details for RP23-465A12.1 - guanine nucleotide binding protein, alpha 13

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14674

Tuberculist Genomic Region

16154 interleukin 10 receptor, alpha

Details for - - interleukin 10 receptor, alpha

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16154

Tuberculist Genomic Region

17135 v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)

Details for - - v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17135

Tuberculist Genomic Region

19024 PTPRF interacting protein, binding protein 2 (liprin beta 2)

Details for - - PTPRF interacting protein, binding protein 2 (liprin beta 2)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19024

Tuberculist Genomic Region

327987 mediator complex subunit 13

Details for RP23-50E4.3 - mediator complex subunit 13

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 327987

Tuberculist Genomic Region

52392 DNA segment, Chr 1, ERATO Doi 622, expressed

Details for - - DNA segment, Chr 1, ERATO Doi 622, expressed

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 52392

Tuberculist Genomic Region

57783 TNFAIP3 interacting protein 1

Details for - - TNFAIP3 interacting protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 57783

Tuberculist Genomic Region

66597 tripartite motif-containing 13

Details for - - tripartite motif-containing 13

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66597

Tuberculist Genomic Region

67579 cytoplasmic polyadenylation element binding protein 4

Details for RP23-186D6.1 - cytoplasmic polyadenylation element binding protein 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67579

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_TR4_03_M01782 0.684211 0.0000000156

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
2.4 AAACWAAMAAA NA 6 TCTTSCTTNCTT NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
0.84 TCCGCA NA 1.07 ATCGCGGT NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.99 AGAGTATG NA NA NA NA NA

3p UTR PITA

miRNAs percTargets pValue
mmu-miR-429, mmu-miR-200c, mmu-miR-200b 0.846154 0.0000246

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-3062 0.5625 0.0000303

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