PITA_165 megaCluster: 8 Residual: 0.26

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_165 8 0.26 15 0 0.877904 0

Members

Displaying 1 - 52 of 52
109299 RIKEN cDNA C330006A16 gene

Details for - - RIKEN cDNA C330006A16 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 109299

Tuberculist Genomic Region

110078 brain glycogen phosphorylase

Details for RP23-241M12.1 - brain glycogen phosphorylase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 110078

Tuberculist Genomic Region

216011 leucine rich repeat containing 20

Details for - - leucine rich repeat containing 20

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 216011

Tuberculist Genomic Region

216829 membrane magnesium transporter 2

Details for - - membrane magnesium transporter 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 216829

Tuberculist Genomic Region

21841 cytotoxic granule-associated RNA binding protein 1

Details for - - cytotoxic granule-associated RNA binding protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21841

Tuberculist Genomic Region

229615 protein inhibitor of activated STAT 3

Details for - - protein inhibitor of activated STAT 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 229615

Tuberculist Genomic Region

231279 GUF1 GTPase homolog (S. cerevisiae)

Details for - - GUF1 GTPase homolog (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 231279

Tuberculist Genomic Region

67046 TBC1 domain family, member 7

Details for - - TBC1 domain family, member 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67046

Tuberculist Genomic Region

74616 secernin 3

Details for RP23-463K8.3 - secernin 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74616

Tuberculist Genomic Region

74653 protein-O-mannose kinase

Details for - - protein-O-mannose kinase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74653

Tuberculist Genomic Region

78829 TSC22 domain family, member 4

Details for - - TSC22 domain family, member 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 78829

Tuberculist Genomic Region

11920 solute carrier family 15, member 4

Details for - - solute carrier family 15, member 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100561

Tuberculist Genomic Region

12764 ataxia telangiectasia mutated homolog (human)

Details for - - ataxia telangiectasia mutated homolog (human)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11920

Tuberculist Genomic Region

13144 cytidine monophospho-N-acetylneuraminic acid synthetase

Details for - - cytidine monophospho-N-acetylneuraminic acid synthetase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12764

Tuberculist Genomic Region

15170 death-associated protein kinase 3

Details for - - death-associated protein kinase 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13144

Tuberculist Genomic Region

15184 protein tyrosine phosphatase, non-receptor type 6

Details for - - protein tyrosine phosphatase, non-receptor type 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15170

Tuberculist Genomic Region

15925 histone deacetylase 5

Details for RP23-461C4.2 - histone deacetylase 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15184

Tuberculist Genomic Region

16909 insulin degrading enzyme

Details for - - insulin degrading enzyme

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15925

Tuberculist Genomic Region

17916 LIM domain only 2

Details for RP23-261L3.1 - LIM domain only 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16909

Tuberculist Genomic Region

17966 myosin IF

Details for - - myosin IF

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17916

Tuberculist Genomic Region

19414 neighbor of Brca1 gene 1

Details for RP23-382C19.1 - neighbor of Brca1 gene 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17966

Tuberculist Genomic Region

209011 RAS p21 protein activator 3

Details for - - RAS p21 protein activator 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19414

Tuberculist Genomic Region

214952 sirtuin 7

Details for RP23-84C12.8 - sirtuin 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 209011

Tuberculist Genomic Region

22368 ras homolog gene family, member T2

Details for - - ras homolog gene family, member T2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 214952

Tuberculist Genomic Region

224617 transient receptor potential cation channel, subfamily V, member 2

Details for RP23-234K24.7 - transient receptor potential cation channel, subfamily V, member 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22368

Tuberculist Genomic Region

225283 TBC1 domain family, member 24

Details for - - TBC1 domain family, member 24

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 224617

Tuberculist Genomic Region

22700 regulation of nuclear pre-mRNA domain containing 1A

Details for - - regulation of nuclear pre-mRNA domain containing 1A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 225283

Tuberculist Genomic Region

235461 zinc finger protein 40

Details for RP24-440M15.1 - zinc finger protein 40

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22700

Tuberculist Genomic Region

23885 family with sequence similarity 63, member B

Details for - - family with sequence similarity 63, member B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 235461

Tuberculist Genomic Region

240068 germ cell-less homolog 1 (Drosophila)

Details for - - germ cell-less homolog 1 (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 23885

Tuberculist Genomic Region

242557 zinc finger protein 563

Details for RP24-63E7.2 - zinc finger protein 563

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 240068

Tuberculist Genomic Region

56032 autophagy related 4C, cysteine peptidase

Details for RP23-59N8.1 - autophagy related 4C, cysteine peptidase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 242557

Tuberculist Genomic Region

66522 nitrogen permease regulator-like 2

Details for - - nitrogen permease regulator-like 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56032

Tuberculist Genomic Region

66609 pyroglutamyl-peptidase I

Details for - - pyroglutamyl-peptidase I

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66522

Tuberculist Genomic Region

66682 crystallin, zeta (quinone reductase)-like 1

Details for - - crystallin, zeta (quinone reductase)-like 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66609

Tuberculist Genomic Region

67278 trafficking protein particle complex 5

Details for - - trafficking protein particle complex 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66682

Tuberculist Genomic Region

68188 PAXIP1 associated glutamate rich protein 1A

Details for - - PAXIP1 associated glutamate rich protein 1A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67278

Tuberculist Genomic Region

71778 symplekin

Details for - - symplekin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68188

Tuberculist Genomic Region

72181 kelch-like 5

Details for - - kelch-like 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71778

Tuberculist Genomic Region

74018 NOL1/NOP2/Sun domain family, member 4

Details for RP23-383D12.4 - NOL1/NOP2/Sun domain family, member 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72181

Tuberculist Genomic Region

76773 amyotrophic lateral sclerosis 2 (juvenile)

Details for - - amyotrophic lateral sclerosis 2 (juvenile)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74018

Tuberculist Genomic Region

78334 WDYHV motif containing 1

Details for - - WDYHV motif containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76773

Tuberculist Genomic Region

791088 cyclin-dependent kinase 19

Details for - - cyclin-dependent kinase 19

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 78334

Tuberculist Genomic Region

216443 RIKEN cDNA C630016N16 gene

Details for - - RIKEN cDNA C630016N16 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 791088

Tuberculist Genomic Region

219144 methionine-tRNA synthetase

Details for - - methionine-tRNA synthetase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 216443

Tuberculist Genomic Region

27015 ADP-ribosylation factor-like 11

Details for - - ADP-ribosylation factor-like 11

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 219144

Tuberculist Genomic Region

408022 polymerase (DNA directed), kappa

Details for - - polymerase (DNA directed), kappa

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27015

Tuberculist Genomic Region

50753 primase and polymerase (DNA-directed)

Details for - - primase and polymerase (DNA-directed)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 408022

Tuberculist Genomic Region

56249 F-box protein 8

Details for - - F-box protein 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 50753

Tuberculist Genomic Region

17346 ARP8 actin-related protein 8

Details for - - ARP8 actin-related protein 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56249

Tuberculist Genomic Region

14247 MAP kinase-interacting serine/threonine kinase 1

Details for RP23-374N19.2 - MAP kinase-interacting serine/threonine kinase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17346

Tuberculist Genomic Region

Details for - - Friend leukemia integration 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14247

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_SP1_Q6_M00196 0.980392 0.0000046

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.00000034 TTTTTGTTTTWA NA 0.93 TGCGCASGCGC V$ZFP206_01_M01742, V$NRF1_Q6_M00652, V$EGR3_01_M00245, V$EGR2_01_M00246, V$EGR1_01_M00243, NRF1_NRF_full_dimeric_12_1

Upstream Weeder Motif

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.52 TCGCCG NA NA 0.41 ACNCCGTC NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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