PITA_168 megaCluster: 11 Residual: 0.18

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_168 11 0.18 15 0 0.928939 0

Members

Displaying 1 - 23 of 23
98386 lamin B receptor

Details for - - lamin B receptor

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 98386

Tuberculist Genomic Region

100037258 DnaJ (Hsp40) homolog, subfamily C, member 3

Details for - - DnaJ (Hsp40) homolog, subfamily C, member 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100037258

Tuberculist Genomic Region

110391 quinoid dihydropteridine reductase

Details for - - quinoid dihydropteridine reductase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 110391

Tuberculist Genomic Region

12580 cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)

Details for RP23-320F19.3 - cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12580

Tuberculist Genomic Region

16211 karyopherin (importin) beta 1

Details for RP23-81D2.3 - karyopherin (importin) beta 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16211

Tuberculist Genomic Region

16880 leukemia inhibitory factor receptor

Details for - - leukemia inhibitory factor receptor

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16880

Tuberculist Genomic Region

17748 metallothionein 1

Details for - - metallothionein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17748

Tuberculist Genomic Region

18140 ubiquitin-like, containing PHD and RING finger domains, 1

Details for - - ubiquitin-like, containing PHD and RING finger domains, 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18140

Tuberculist Genomic Region

19224 prostaglandin-endoperoxide synthase 1

Details for RP23-454A14.3 - prostaglandin-endoperoxide synthase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19224

Tuberculist Genomic Region

211347 pantothenate kinase 3

Details for RP23-196B5.1 - pantothenate kinase 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 211347

Tuberculist Genomic Region

218977 discs, large (Drosophila) homolog-associated protein 5

Details for - - discs, large (Drosophila) homolog-associated protein 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 218977

Tuberculist Genomic Region

219114 spindle and kinetochore associated complex subunit 3

Details for - - spindle and kinetochore associated complex subunit 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 219114

Tuberculist Genomic Region

228421 kinesin family member 18A

Details for RP23-206C1.1 - kinesin family member 18A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 228421

Tuberculist Genomic Region

240641 kinesin family member 20B

Details for - - kinesin family member 20B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 240641

Tuberculist Genomic Region

241226 integrin alpha 8

Details for RP23-202C2.1 - integrin alpha 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 241226

Tuberculist Genomic Region

67141 F-box protein 5

Details for - - F-box protein 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67141

Tuberculist Genomic Region

67849 cell division cycle associated 5

Details for - - cell division cycle associated 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67849

Tuberculist Genomic Region

68026 RIKEN cDNA 2810417H13 gene

Details for - - RIKEN cDNA 2810417H13 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68026

Tuberculist Genomic Region

71924 epsilon-tubulin 1

Details for - - epsilon-tubulin 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71924

Tuberculist Genomic Region

74205 acyl-CoA synthetase long-chain family member 3

Details for - - acyl-CoA synthetase long-chain family member 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74205

Tuberculist Genomic Region

78894 acetoacetyl-CoA synthetase

Details for - - acetoacetyl-CoA synthetase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 78894

Tuberculist Genomic Region

110033 kinesin family member 22

Details for - - kinesin family member 22

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 110033

Tuberculist Genomic Region

224171 RIKEN cDNA C330027C09 gene

Details for - - RIKEN cDNA C330027C09 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 224171

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_ZFP281_01_M01597 1 0

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.0029 AAAAAAAAWAAA NA 460 TTTTKAATTANY Prrx2_MA0075.1, Pdx1_MA0132.1, ARID3A_MA0151.1, Lhx1.1, Lmx1a.1, Lmx1b.1, Hoxc5.1, Hoxa4.1, Lhx5.1, Arid3a.2, Hoxc4.1, Hoxb4.1, Hlx1.1, Vsx1.1, Lhx3.1, Nkx6-3.1, Hoxc6.1, Pou2f1.1, Nkx6-1.2

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.48 TCGCGG NA 1.73 TCGCGCGA V$E2F_03_M00516, V$E2F1_Q3_01_M00938

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.67 ACMGTT NA NA 0.81 ACATTGGT NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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