PITA_227 megaCluster: 3 Residual: 0.16 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
PITA_227	3	0.16	15	0	0.958121	0

Members

Displaying 1 - 28 of 28

100033459 pyrin domain containing 3 Details for - - pyrin domain containing 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 100033459 Tuberculist Genomic Region	100702 guanylate binding protein 6 Details for - - guanylate binding protein 6 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 100702 Tuberculist Genomic Region
108116 solute carrier organic anion transporter family, member 3a1 Details for - - solute carrier organic anion transporter family, member 3a1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 108116 Tuberculist Genomic Region	12370 caspase 8 Details for - - caspase 8 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12370 Tuberculist Genomic Region
142688 ankyrin repeat and SOCS box-containing 13 Details for - - ankyrin repeat and SOCS box-containing 13 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 142688 Tuberculist Genomic Region	15162 hemopoietic cell kinase Details for - - hemopoietic cell kinase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 15162 Tuberculist Genomic Region
20684 nuclear antigen Sp100 Details for - - nuclear antigen Sp100 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20684 Tuberculist Genomic Region	20847 signal transducer and activator of transcription 2 Details for - - signal transducer and activator of transcription 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20847 Tuberculist Genomic Region
20853 staufen (RNA binding protein) homolog 1 (Drosophila) Details for RP23-19L12.1 - staufen (RNA binding protein) homolog 1 (Drosophila) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20853 Tuberculist Genomic Region	216991 ArfGAP with dual PH domains 2 Details for RP23-7J19.2 - ArfGAP with dual PH domains 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 216991 Tuberculist Genomic Region
231002 pleckstrin homology domain containing, family N member 1 Details for - - pleckstrin homology domain containing, family N member 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 231002 Tuberculist Genomic Region	231430 cytochrome c oxidase assembly protein 18 Details for - - cytochrome c oxidase assembly protein 18 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 231430 Tuberculist Genomic Region
231655 2'-5' oligoadenylate synthetase-like 1 Details for - - 2'-5' oligoadenylate synthetase-like 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 231655 Tuberculist Genomic Region	23960 2'-5' oligoadenylate synthetase 1G Details for - - 2'-5' oligoadenylate synthetase 1G GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 23960 Tuberculist Genomic Region
243771 poly (ADP-ribose) polymerase family, member 12 Details for - - poly (ADP-ribose) polymerase family, member 12 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 243771 Tuberculist Genomic Region	270084 lysophosphatidylcholine acyltransferase 2 Details for - - lysophosphatidylcholine acyltransferase 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 270084 Tuberculist Genomic Region
27056 interferon regulatory factor 5 Details for - - interferon regulatory factor 5 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 27056 Tuberculist Genomic Region	30935 torsin family 3, member A Details for - - torsin family 3, member A GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 30935 Tuberculist Genomic Region
380863 transmembrane protein 171 Details for - - transmembrane protein 171 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 380863 Tuberculist Genomic Region	56045 SAM domain and HD domain, 1 Details for RP23-163J20.2 - SAM domain and HD domain, 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 56045 Tuberculist Genomic Region
574428 zinc finger, MYND-type containing 15 Details for DN-491F10.7 - zinc finger, MYND-type containing 15 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 574428 Tuberculist Genomic Region	57444 interferon-stimulated protein Details for - - interferon-stimulated protein GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 57444 Tuberculist Genomic Region
67138 hect domain and RLD 6 Details for - - hect domain and RLD 6 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67138 Tuberculist Genomic Region	68497 apoptosis resistant E3 ubiquitin protein ligase 1 Details for - - apoptosis resistant E3 ubiquitin protein ligase 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68497 Tuberculist Genomic Region
70144 leucine-rich repeats and calponin homology (CH) domain containing 3 Details for - - leucine-rich repeats and calponin homology (CH) domain containing 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 70144 Tuberculist Genomic Region	73656 membrane-spanning 4-domains, subfamily A, member 6C Details for - - membrane-spanning 4-domains, subfamily A, member 6C GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 73656 Tuberculist Genomic Region
74748 SLAM family member 8 Details for - - SLAM family member 8 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 74748 Tuberculist Genomic Region	80861 DEXH (Asp-Glu-X-His) box polypeptide 58 Details for RP23-390D17.5 - DEXH (Asp-Glu-X-His) box polypeptide 58 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 80861 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
V_ISGF3G_03_M02771	0.392857	0.0000000000177

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
0.000000000019	GAAACTNAAAM	IRF1_MA0050.1, STAT1_MA0137.1, IRF2_MA0051.1, Isgf3g.1, IRF5_IRF_full_dimeric_14_1, IRF7_IRF_DBD_dimeric_14_1, IRF3_IRF_full_trimeric_21_1, IRF8_IRF_full_dimeric_14_1, IRF9_IRF_full_trimeric_15_1, IRF4_IRF_full_dimeric_15_1	2.7	TTTCNNTTKYCT	STAT1_MA0137.1, IRF1_MA0050.1, IRF2_MA0051.1, V$IRF2_Q6_M01882, V$IRF_Q6_01_M00972, V$ISRE_01_M00258, V$IRF_Q6_M00772, V$IRF7_01_M00453, V$IRF1_Q6_01_M01881, IRF3_IRF_full_trimeric_21_1

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
0.82	CCGAAA	NA	0.99	GNNCCGGC	NA

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.43	GCATCG	NA	NA	0.52	TGANGGGT	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
NA

3p UTR TargetScan

miRNAs	percTargets	pValue
NA

Add comment

Log in or register to post comments