PITA_28 megaCluster: 2 Residual: 0.21

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_28 2 0.21 15 0 0.912856 0

Members

Displaying 1 - 34 of 34
100038411 predicted gene 15998

Details for - - predicted gene 15998

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100038411

Tuberculist Genomic Region

100504219 predicted gene, 20117

Details for - - predicted gene, 20117

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100504219

Tuberculist Genomic Region

109361 RIKEN cDNA D730005E14 gene

Details for - - RIKEN cDNA D730005E14 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 109361

Tuberculist Genomic Region

11630 absent in melanoma 1

Details for - - absent in melanoma 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11630

Tuberculist Genomic Region

12562 cadherin 5

Details for - - cadherin 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12562

Tuberculist Genomic Region

14058 coagulation factor X

Details for - - coagulation factor X

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14058

Tuberculist Genomic Region

16891 lipase, endothelial

Details for - - lipase, endothelial

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16891

Tuberculist Genomic Region

17119 MAX dimerization protein 1

Details for - - MAX dimerization protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17119

Tuberculist Genomic Region

17769 5,10-methylenetetrahydrofolate reductase

Details for RP23-139J21.2 - 5,10-methylenetetrahydrofolate reductase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17769

Tuberculist Genomic Region

20715 serine (or cysteine) peptidase inhibitor, clade A, member 3G

Details for - - serine (or cysteine) peptidase inhibitor, clade A, member 3G

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20715

Tuberculist Genomic Region

212168 zinc finger SWIM-type containing 4

Details for - - zinc finger SWIM-type containing 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 212168

Tuberculist Genomic Region

214855 AT rich interactive domain 5A (MRF1-like)

Details for - - AT rich interactive domain 5A (MRF1-like)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 214855

Tuberculist Genomic Region

22329 vascular cell adhesion molecule 1

Details for - - vascular cell adhesion molecule 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22329

Tuberculist Genomic Region

224796 chloride intracellular channel 5

Details for - - chloride intracellular channel 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 224796

Tuberculist Genomic Region

22670 tripartite motif-containing 26

Details for RP23-77N9.1 - tripartite motif-containing 26

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22670

Tuberculist Genomic Region

227960 grancalcin

Details for RP23-34J8.3 - grancalcin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 227960

Tuberculist Genomic Region

229227 RIKEN cDNA 4932438A13 gene

Details for CT7-315N12.1 - RIKEN cDNA 4932438A13 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 229227

Tuberculist Genomic Region

240047 matrix metallopeptidase 25

Details for - - matrix metallopeptidase 25

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 240047

Tuberculist Genomic Region

243197 major facilitator superfamily domain containing 7A

Details for - - major facilitator superfamily domain containing 7A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 243197

Tuberculist Genomic Region

27356 insulin-like 6

Details for - - insulin-like 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27356

Tuberculist Genomic Region

319448 fibronectin type III domain containing 3A

Details for - - fibronectin type III domain containing 3A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 319448

Tuberculist Genomic Region

434204 WAS protein homolog associated with actin, golgi membranes and microtubules

Details for - - WAS protein homolog associated with actin, golgi membranes and microtubules

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 434204

Tuberculist Genomic Region

54384 myotubularin related protein 7

Details for - - myotubularin related protein 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54384

Tuberculist Genomic Region

54721 tyrosine kinase 2

Details for - - tyrosine kinase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54721

Tuberculist Genomic Region

620913 predicted gene 12185

Details for RP23-14F5.7 - predicted gene 12185

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 620913

Tuberculist Genomic Region

622459 predicted gene 12216

Details for RP23-303F24.3 - predicted gene 12216

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 622459

Tuberculist Genomic Region

628705 PHD finger protein 11C

Details for mCG_1037415 - PHD finger protein 11C

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 628705

Tuberculist Genomic Region

80751 ring finger protein 34

Details for - - ring finger protein 34

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 80751

Tuberculist Genomic Region

84035 kringle containing transmembrane protein 1

Details for RP23-293J16.1 - kringle containing transmembrane protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 84035

Tuberculist Genomic Region

100504699 RIKEN cDNA 9030425P06 gene

Details for - - RIKEN cDNA 9030425P06 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100504699

Tuberculist Genomic Region

14571 glycerol phosphate dehydrogenase 2, mitochondrial

Details for - - glycerol phosphate dehydrogenase 2, mitochondrial

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14571

Tuberculist Genomic Region

218613 mesoderm induction early response 1, family member 3

Details for - - mesoderm induction early response 1, family member 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 218613

Tuberculist Genomic Region

257632 nucleotide-binding oligomerization domain containing 2

Details for - - nucleotide-binding oligomerization domain containing 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 257632

Tuberculist Genomic Region

67245 pellino 1

Details for RP23-93O11.1 - pellino 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67245

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_MTERF_01_M01245 0.310345 0.0000234

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
70 TTANTTNTNAAA NA 250 ANRACAANRAAA NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
0.91 CGGGCC NA NA NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.52 CGCGAG NA NA 0.75 CGTCNCGA NA NA

3p UTR PITA

miRNAs percTargets pValue
mmu-miR-1186 0.826087 0.00000182

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-3073-3p 0.44 0.00000562

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