PITA_3 megaCluster: 4 Residual: 0.24

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_3 4 0.24 10 0 0.786476 0.015

Members

Displaying 1 - 35 of 35
100039353 ribosomal protein L34 pseudogene

Details for - - ribosomal protein L34 pseudogene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100039353

Tuberculist Genomic Region

110109 NOP2 nucleolar protein

Details for - - NOP2 nucleolar protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 110109

Tuberculist Genomic Region

11816 apolipoprotein E

Details for - - apolipoprotein E

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11816

Tuberculist Genomic Region

140780 BMP2 inducible kinase

Details for - - BMP2 inducible kinase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 140780

Tuberculist Genomic Region

14744 G-protein coupled receptor 65

Details for - - G-protein coupled receptor 65

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14744

Tuberculist Genomic Region

17254 solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2

Details for - - solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17254

Tuberculist Genomic Region

20725 serine (or cysteine) peptidase inhibitor, clade B, member 8

Details for - - serine (or cysteine) peptidase inhibitor, clade B, member 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20725

Tuberculist Genomic Region

20841 zinc finger protein 143

Details for - - zinc finger protein 143

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20841

Tuberculist Genomic Region

217119 xylosyltransferase II

Details for RP23-290B5.5 - xylosyltransferase II

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 217119

Tuberculist Genomic Region

22190 ubiquitin C

Details for - - ubiquitin C

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22190

Tuberculist Genomic Region

223774 asparagine-linked glycosylation 12 (alpha-1,6-mannosyltransferase)

Details for - - asparagine-linked glycosylation 12 (alpha-1,6-mannosyltransferase)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 223774

Tuberculist Genomic Region

225028 mitogen-activated protein kinase kinase kinase kinase 3

Details for - - mitogen-activated protein kinase kinase kinase kinase 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 225028

Tuberculist Genomic Region

231633 transmembrane protein 119

Details for - - transmembrane protein 119

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 231633

Tuberculist Genomic Region

234577 copine II

Details for - - copine II

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 234577

Tuberculist Genomic Region

234779 phospholipase C, gamma 2

Details for - - phospholipase C, gamma 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 234779

Tuberculist Genomic Region

24056 SH3-domain binding protein 5 (BTK-associated)

Details for - - SH3-domain binding protein 5 (BTK-associated)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 24056

Tuberculist Genomic Region

26446 proteasome (prosome, macropain) subunit, beta type 3

Details for RP23-94N18.8 - proteasome (prosome, macropain) subunit, beta type 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26446

Tuberculist Genomic Region

266632 interleukin-1 receptor-associated kinase 4

Details for - - interleukin-1 receptor-associated kinase 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 266632

Tuberculist Genomic Region

26900 DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked

Details for - - DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26900

Tuberculist Genomic Region

27081 zinc finger protein 275

Details for RP23-95K12.3 - zinc finger protein 275

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27081

Tuberculist Genomic Region

27275 nuclear fragile X mental retardation protein interacting protein 1

Details for - - nuclear fragile X mental retardation protein interacting protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27275

Tuberculist Genomic Region

27369 deoxyguanosine kinase

Details for - - deoxyguanosine kinase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27369

Tuberculist Genomic Region

50721 sirtuin 6

Details for - - sirtuin 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 50721

Tuberculist Genomic Region

52466 solute carrier family 46, member 1

Details for RP23-399H5.1 - solute carrier family 46, member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 52466

Tuberculist Genomic Region

623174 predicted gene 6404

Details for - - predicted gene 6404

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 623174

Tuberculist Genomic Region

64380 membrane-spanning 4-domains, subfamily A, member 4C

Details for - - membrane-spanning 4-domains, subfamily A, member 4C

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 64380

Tuberculist Genomic Region

66102 chemokine (C-X-C motif) ligand 16

Details for DN-491F10.6 - chemokine (C-X-C motif) ligand 16

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66102

Tuberculist Genomic Region

67197 zinc finger CCHC-type and RNA binding motif 1

Details for - - zinc finger CCHC-type and RNA binding motif 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67197

Tuberculist Genomic Region

67739 solute carrier family 48 (heme transporter), member 1

Details for - - solute carrier family 48 (heme transporter), member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67739

Tuberculist Genomic Region

67803 LIM domain containing 2

Details for RP23-81G14.8 - LIM domain containing 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67803

Tuberculist Genomic Region

71998 solute carrier family 25, member 35

Details for RP23-396M19.7 - solute carrier family 25, member 35

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71998

Tuberculist Genomic Region

74919 solute carrier family 35, member F6

Details for - - solute carrier family 35, member F6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74919

Tuberculist Genomic Region

75901 DCP1 decapping enzyme homolog A (S. cerevisiae)

Details for - - DCP1 decapping enzyme homolog A (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75901

Tuberculist Genomic Region

94178 mucolipin 1

Details for - - mucolipin 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 94178

Tuberculist Genomic Region

99899 interferon-induced protein 44

Details for - - interferon-induced protein 44

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 99899

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_ETS_B_M00340 0.484848 0.0000183

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
4.7 AAAAARGAAAA IRF1_MA0050.1, STAT1_MA0137.1 3200 AKTTTNCTAAA NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.22 GCCGGA NA 1.22 GCCGAKCG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.47 ACGCGC NA NA 0.68 CCNGCTAG NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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