PITA_37 megaCluster: 11 Residual: 0.19

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
PITA_37	11	0.19	15	0	0.9245	0

Members

Displaying 1 - 43 of 43

TFBS DB TF

TFs	percTargets	pValue
ETV6_ETS_full_monomeric_10_1	0.375	0.00000748

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
0.00000000000017	AGAAANAAAAA	NA	0.038	RKGGGCGGGGC	Klf4_MA0039.2, SP1_MA0079.2, SP1_MA0079.1, V$SP1_Q6_M00196, V$SP1_Q4_01_M00932, V$SP1_Q6_01_M00931, V$SP4_Q5_M01273, V$SP1_Q2_01_M00933, V$GC_01_M00255, V$KLF7_03_M02773, V$GKLF_02_M01588, V$SP2_01_M01783, V$SP1_03_M02281, V$SP1_02_M01303, V$ZFP281_01_M01597, V$SMAD4_04_M02898, V$SP1_01_M00008, V$MAZR_01_M00491, V$UF1H3BETA_Q6_M01068, V$SP4_03_M02810, V$E2F3_Q6_M02089, V$KROX_Q6_M00982, V$CKROX_Q2_M01175, V$CACD_01_M01113, V$MAZ_Q6_01_M02023, V$EGR1_06_M02744, V$ZFP740_03_M02834, V$ZFP281_04_M02831, V$EGR1_Q6_M01873, V$ZBP89_Q4_M01816, V$SP4_04_M02914, V$ZNF219_01_M01122, V$MAZ_Q6_M00649, V$SP1SP3_Q4_M01219, V$EGR_Q6_M00807, V$BCL6B_04_M02844, V$BTEB3_Q5_M01865, V$ZFP410_04_M02936, V$ETF_Q6_M00695, V$FKLF_Q5_M01837, V$EGR1_02_M01972, V$E2F_Q2_M00803, V$EKLF_Q5_M01874, Klf7.1, Smad3.1, Sp4.1, Egr1.1, Zfp740.1, Zfp281.2, Sp4.2, Zif268.1, Bcl6b.2, Zfp410.1, Ascl2.2, SP4_C2H2_full_monomeric_17_1, SP1_C2H2_DBD_monomeric_11_1, KLF14_C2H2_DBD_monomeric_14_1, SP3_C2H2_DBD_monomeric_11_1, SP8_C2H2_DBD_monomeric_12_1, KLF16_C2H2_DBD_monomeric_11_1, KLF13_C2H2_full_monomeric_18_1, ZNF740_C2H2_full_monomeric_10_1, Klf12_C2H2_DBD_monomeric_15_1, Egr1_C2H2_mouse-DBD_mutant_DBD_monomeric_16_1, Zfp740_C2H2_DBD_monomeric_10_1, EGR2_C2H2_full_monomeric_15_1

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
1.44	CGCGAT	NA	1.46	CTGCGCGN	V$ZFP161_04_M02933, Zfp161.2

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.46	GACGTA	NA	NA	0.52	CTACNTCT	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
NA

3p UTR TargetScan

miRNAs	percTargets	pValue
NA

109785 phosphoglucomutase 3 Details for - - phosphoglucomutase 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 109785 Tuberculist Genomic Region	12785 cellular nucleic acid binding protein Details for - - cellular nucleic acid binding protein GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12785 Tuberculist Genomic Region
17312 C-type lectin domain family 10, member A Details for DN-160I24.1 - C-type lectin domain family 10, member A GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 17312 Tuberculist Genomic Region	19184 protease (prosome, macropain) 26S subunit, ATPase 5 Details for RP23-418O11.3 - protease (prosome, macropain) 26S subunit, ATPase 5 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 19184 Tuberculist Genomic Region
20088 ribosomal protein S24 Details for - - ribosomal protein S24 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20088 Tuberculist Genomic Region	20196 S100 calcium binding protein A13 Details for - - S100 calcium binding protein A13 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20196 Tuberculist Genomic Region
20422 split hand/foot malformation (ectrodactyly) type 1 Details for - - split hand/foot malformation (ectrodactyly) type 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20422 Tuberculist Genomic Region	230908 TAR DNA binding protein Details for RP23-331P21.5 - TAR DNA binding protein GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 230908 Tuberculist Genomic Region
26611 reticulocalbin 2 Details for - - reticulocalbin 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 26611 Tuberculist Genomic Region	26754 COP9 (constitutive photomorphogenic) homolog, subunit 5 (Arabidopsis thaliana) Details for - - COP9 (constitutive photomorphogenic) homolog, subunit 5 (Arabidopsis thaliana) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 26754 Tuberculist Genomic Region
28106 DNA segment, Chr 17, Wayne State University 104, expressed Details for - - DNA segment, Chr 17, Wayne State University 104, expressed GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 28106 Tuberculist Genomic Region	381678 zinc finger, CW type with PWWP domain 1 Details for - - zinc finger, CW type with PWWP domain 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 381678 Tuberculist Genomic Region
52713 coiled-coil domain containing 59 Details for - - coiled-coil domain containing 59 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 52713 Tuberculist Genomic Region	53317 pleiotropic regulator 1, PRL1 homolog (Arabidopsis) Details for - - pleiotropic regulator 1, PRL1 homolog (Arabidopsis) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 53317 Tuberculist Genomic Region
56095 FtsJ homolog 3 (E. coli) Details for RP23-418O11.2 - FtsJ homolog 3 (E. coli) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 56095 Tuberculist Genomic Region	66469 family with sequence similarity 213, member B Details for RP23-15L19.6 - family with sequence similarity 213, member B GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66469 Tuberculist Genomic Region
68015 TNF receptor-associated protein 1 Details for - - TNF receptor-associated protein 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68015 Tuberculist Genomic Region	68114 melanoma associated antigen (mutated) 1 Details for - - melanoma associated antigen (mutated) 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68114 Tuberculist Genomic Region
68202 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5 Details for - - NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68202 Tuberculist Genomic Region	68263 pyruvate dehydrogenase (lipoamide) beta Details for - - pyruvate dehydrogenase (lipoamide) beta GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68263 Tuberculist Genomic Region
68475 Sjogren's syndrome nuclear autoantigen 1 Details for RP23-132N23.16-003 - Sjogren's syndrome nuclear autoantigen 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68475 Tuberculist Genomic Region	69151 leucine zipper and CTNNBIP1 domain containing Details for RP23-153G17.1 - leucine zipper and CTNNBIP1 domain containing GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 69151 Tuberculist Genomic Region
69574 carboxymethylenebutenolidase-like (Pseudomonas) Details for - - carboxymethylenebutenolidase-like (Pseudomonas) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 69574 Tuberculist Genomic Region	69895 small nucleolar RNA host gene 8 Details for - - small nucleolar RNA host gene 8 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 69895 Tuberculist Genomic Region
69957 CDC16 cell division cycle 16 Details for - - CDC16 cell division cycle 16 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 69957 Tuberculist Genomic Region	71609 TNFRSF1A-associated via death domain Details for - - TNFRSF1A-associated via death domain GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 71609 Tuberculist Genomic Region
71968 WD repeat domain 73 Details for - - WD repeat domain 73 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 71968 Tuberculist Genomic Region	72562 pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2 Details for - - pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 72562 Tuberculist Genomic Region
72655 small nucleolar RNA host gene 5 Details for - - small nucleolar RNA host gene 5 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 72655 Tuberculist Genomic Region	84652 family with sequence similarity 126, member A Details for - - family with sequence similarity 126, member A GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 84652 Tuberculist Genomic Region
98985 CLP1, cleavage and polyadenylation factor I subunit Details for RP23-399J8.1 - CLP1, cleavage and polyadenylation factor I subunit GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 98985 Tuberculist Genomic Region	66752 RIKEN cDNA 4933404O12 gene Details for - - RIKEN cDNA 4933404O12 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66752 Tuberculist Genomic Region
11532 alcohol dehydrogenase 5 (class III), chi polypeptide Details for - - alcohol dehydrogenase 5 (class III), chi polypeptide GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 11532 Tuberculist Genomic Region	19352 RAB geranylgeranyl transferase, b subunit Details for - - RAB geranylgeranyl transferase, b subunit GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 19352 Tuberculist Genomic Region
28030 G elongation factor, mitochondrial 1 Details for - - G elongation factor, mitochondrial 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 28030 Tuberculist Genomic Region	52653 NudC domain containing 2 Details for RP23-382C18.4 - NudC domain containing 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 52653 Tuberculist Genomic Region
52683 non-SMC condensin II complex, subunit H2 Details for - - non-SMC condensin II complex, subunit H2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 52683 Tuberculist Genomic Region	54638 coiled-coil domain containing 22 Details for - - coiled-coil domain containing 22 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 54638 Tuberculist Genomic Region
67151 proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 Details for - - proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67151 Tuberculist Genomic Region	68080 GPN-loop GTPase 3 Details for - - GPN-loop GTPase 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68080 Tuberculist Genomic Region
68603 phosphomevalonate kinase Details for - - phosphomevalonate kinase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68603 Tuberculist Genomic Region	71881 adipocyte plasma membrane associated protein Details for RP23-156P22.2 - adipocyte plasma membrane associated protein GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 71881 Tuberculist Genomic Region
80280 CDK5 regulatory subunit associated protein 3 Details for RP23-353J21.7 - CDK5 regulatory subunit associated protein 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 80280 Tuberculist Genomic Region

Summary

Members

Details for - - phosphoglucomutase 3

Details for - - cellular nucleic acid binding protein

Details for DN-160I24.1 - C-type lectin domain family 10, member A

Details for RP23-418O11.3 - protease (prosome, macropain) 26S subunit, ATPase 5

Details for - - ribosomal protein S24

Details for - - S100 calcium binding protein A13

Details for - - split hand/foot malformation (ectrodactyly) type 1

Details for RP23-331P21.5 - TAR DNA binding protein

Details for - - reticulocalbin 2

Details for - - COP9 (constitutive photomorphogenic) homolog, subunit 5 (Arabidopsis thaliana)

Details for - - DNA segment, Chr 17, Wayne State University 104, expressed

Details for - - zinc finger, CW type with PWWP domain 1

Details for - - coiled-coil domain containing 59

Details for - - pleiotropic regulator 1, PRL1 homolog (Arabidopsis)

Details for RP23-418O11.2 - FtsJ homolog 3 (E. coli)

Details for RP23-15L19.6 - family with sequence similarity 213, member B

Details for - - TNF receptor-associated protein 1

Details for - - melanoma associated antigen (mutated) 1

Details for - - NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5

Details for - - pyruvate dehydrogenase (lipoamide) beta

Details for RP23-132N23.16-003 - Sjogren's syndrome nuclear autoantigen 1

Details for RP23-153G17.1 - leucine zipper and CTNNBIP1 domain containing

Details for - - carboxymethylenebutenolidase-like (Pseudomonas)

Details for - - small nucleolar RNA host gene 8

Details for - - CDC16 cell division cycle 16

Details for - - TNFRSF1A-associated via death domain

Details for - - WD repeat domain 73

Details for - - pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2

Details for - - small nucleolar RNA host gene 5

Details for - - family with sequence similarity 126, member A

Details for RP23-399J8.1 - CLP1, cleavage and polyadenylation factor I subunit

Details for - - RIKEN cDNA 4933404O12 gene

Details for - - alcohol dehydrogenase 5 (class III), chi polypeptide

Details for - - RAB geranylgeranyl transferase, b subunit

Details for - - G elongation factor, mitochondrial 1

Details for RP23-382C18.4 - NudC domain containing 2

Details for - - non-SMC condensin II complex, subunit H2

Details for - - coiled-coil domain containing 22

Details for - - proteasome (prosome, macropain) 26S subunit, non-ATPase, 9

Details for - - GPN-loop GTPase 3

Details for - - phosphomevalonate kinase

Details for RP23-156P22.2 - adipocyte plasma membrane associated protein

Details for RP23-353J21.7 - CDK5 regulatory subunit associated protein 3

GO Terms

3p UTR PITA