PITA_55 megaCluster: 3 Residual: 0.29

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_55 3 0.29 13 0 0.833974 0

Members

Displaying 1 - 24 of 24
11988 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2

Details for - - solute carrier family 7 (cationic amino acid transporter, y+ system), member 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11988

Tuberculist Genomic Region

13000 casein kinase 2, alpha prime polypeptide

Details for - - casein kinase 2, alpha prime polypeptide

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13000

Tuberculist Genomic Region

16497 potassium voltage-gated channel, shaker-related subfamily, beta member 1

Details for - - potassium voltage-gated channel, shaker-related subfamily, beta member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16497

Tuberculist Genomic Region

16648 karyopherin (importin) alpha 3

Details for - - karyopherin (importin) alpha 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16648

Tuberculist Genomic Region

192657 elongation factor RNA polymerase II 2

Details for - - elongation factor RNA polymerase II 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 192657

Tuberculist Genomic Region

209387 tripartite motif-containing 30D

Details for - - tripartite motif-containing 30D

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 209387

Tuberculist Genomic Region

214639 RIKEN cDNA 4930486L24 gene

Details for - - RIKEN cDNA 4930486L24 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 214639

Tuberculist Genomic Region

234311 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60

Details for - - DEAD (Asp-Glu-Ala-Asp) box polypeptide 60

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 234311

Tuberculist Genomic Region

236312 pyrin and HIN domain family, member 1

Details for - - pyrin and HIN domain family, member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 236312

Tuberculist Genomic Region

24110 ubiquitin specific peptidase 18

Details for - - ubiquitin specific peptidase 18

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 24110

Tuberculist Genomic Region

327978 schlafen 5

Details for RP23-392I13.5 - schlafen 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 327978

Tuberculist Genomic Region

329795 transmembrane protein 67

Details for RP23-203A12.5 - transmembrane protein 67

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 329795

Tuberculist Genomic Region

50934 solute carrier family 7 (cationic amino acid transporter, y+ system), member 8

Details for - - solute carrier family 7 (cationic amino acid transporter, y+ system), member 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 50934

Tuberculist Genomic Region

54216 protocadherin 7

Details for - - protocadherin 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54216

Tuberculist Genomic Region

66674 SPRY domain containing 7

Details for RP23-38F20.1 - SPRY domain containing 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66674

Tuberculist Genomic Region

67067 reactive oxygen species modulator 1

Details for RP23-107C23.2 - reactive oxygen species modulator 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67067

Tuberculist Genomic Region

69028 MIT, microtubule interacting and transport, domain containing 1

Details for - - MIT, microtubule interacting and transport, domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69028

Tuberculist Genomic Region

16164 interleukin 13 receptor, alpha 1

Details for RP23-132G2.1 - interleukin 13 receptor, alpha 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16164

Tuberculist Genomic Region

17342 microphthalmia-associated transcription factor

Details for - - microphthalmia-associated transcription factor

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17342

Tuberculist Genomic Region

18173 solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1

Details for - - solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18173

Tuberculist Genomic Region

18689 per-hexamer repeat gene 4

Details for - - per-hexamer repeat gene 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18689

Tuberculist Genomic Region

19734 regulator of G-protein signaling 16

Details for - - regulator of G-protein signaling 16

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19734

Tuberculist Genomic Region

231549 leucine rich repeat containing 8D

Details for - - leucine rich repeat containing 8D

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 231549

Tuberculist Genomic Region

791405 predicted gene 10002

Details for - - predicted gene 10002

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 791405

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_IRF_Q6_M00772 0.5 0.0000179

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.00000000000011 AARAAAWAAAAA NA 830 ATNWAACANAG NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.15 CGGACC NA 1.36 GGTCCGCG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.67 TAATAG NA NA 0.97 TTATGTGG NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-126-5p 0.55 0.0000162

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