PITA_56 megaCluster: 3 Residual: 0.20

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_56 3 0.20 15 0 0.917468 0

Members

Displaying 1 - 29 of 29
12393 predicted gene, 19551

Details for - - predicted gene, 19551

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100503094

Tuberculist Genomic Region

170676 runt related transcription factor 2

Details for - - runt related transcription factor 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12393

Tuberculist Genomic Region

171254 paternally expressed 10

Details for - - paternally expressed 10

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 170676

Tuberculist Genomic Region

18729 vomeronasal 1 receptor 198

Details for RP23-124G18.5 - vomeronasal 1 receptor 198

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 171254

Tuberculist Genomic Region

216991 paired-Ig-like receptor A6

Details for - - paired-Ig-like receptor A6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18729

Tuberculist Genomic Region

230073 ArfGAP with dual PH domains 2

Details for RP23-7J19.2 - ArfGAP with dual PH domains 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 216991

Tuberculist Genomic Region

258025 DEAD (Asp-Glu-Ala-Asp) box polypeptide 58

Details for RP23-9F23.2 - DEAD (Asp-Glu-Ala-Asp) box polypeptide 58

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 230073

Tuberculist Genomic Region

320705 olfactory receptor 1211

Details for RP23-260B13.3 - olfactory receptor 1211

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 258025

Tuberculist Genomic Region

54004 BEN domain containing 6

Details for - - BEN domain containing 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 320705

Tuberculist Genomic Region

56382 diaphanous homolog 2 (Drosophila)

Details for - - diaphanous homolog 2 (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54004

Tuberculist Genomic Region

58218 RAB9, member RAS oncogene family

Details for RP23-408K4.3 - RAB9, member RAS oncogene family

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56382

Tuberculist Genomic Region

723849 triggering receptor expressed on myeloid cells 3

Details for - - triggering receptor expressed on myeloid cells 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 58218

Tuberculist Genomic Region

77987 microRNA 34b

Details for - - microRNA 34b

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 723849

Tuberculist Genomic Region

81702 activating signal cointegrator 1 complex subunit 3

Details for - - activating signal cointegrator 1 complex subunit 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 77987

Tuberculist Genomic Region

100503460 ankyrin repeat domain 17

Details for - - ankyrin repeat domain 17

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 81702

Tuberculist Genomic Region

100504591 predicted gene, 19705

Details for - - predicted gene, 19705

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100503460

Tuberculist Genomic Region

100715 predicted gene 15987

Details for - - predicted gene 15987

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100504591

Tuberculist Genomic Region

142980 PAP associated domain containing 4

Details for - - PAP associated domain containing 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100715

Tuberculist Genomic Region

208263 toll-like receptor 3

Details for - - toll-like receptor 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 142980

Tuberculist Genomic Region

209630 torsin A interacting protein 1

Details for - - torsin A interacting protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 208263

Tuberculist Genomic Region

26362 FERM domain containing 4A

Details for RP23-198D21.2 - FERM domain containing 4A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 209630

Tuberculist Genomic Region

74081 AXL receptor tyrosine kinase

Details for - - AXL receptor tyrosine kinase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26362

Tuberculist Genomic Region

17387 centrosomal protein 350

Details for - - centrosomal protein 350

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74081

Tuberculist Genomic Region

20354 matrix metallopeptidase 14 (membrane-inserted)

Details for - - matrix metallopeptidase 14 (membrane-inserted)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17387

Tuberculist Genomic Region

212943 sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D

Details for - - sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20354

Tuberculist Genomic Region

399558 family with sequence similarity 46, member A

Details for - - family with sequence similarity 46, member A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 212943

Tuberculist Genomic Region

672511 fibronectin leucine rich transmembrane protein 2

Details for - - fibronectin leucine rich transmembrane protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 399558

Tuberculist Genomic Region

98999 ring finger protein 213

Details for RP23-25M3.4 - ring finger protein 213

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 672511

Tuberculist Genomic Region

Details for RP23-19L12.5 - zinc finger, NFX1-type containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 98999

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_ISGF3G_03_M02771 0.363636 0.0000000105

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.00000044 TTTTTCTTTTTT NA 0.4 AAANATYAANAA NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
0.88 CGCGAT NA 0.98 GGCGRCTG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.78 GTANNATT mmu-mir-487b-3p 8mer NA NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-1193-5p 0.380952 0.000000427

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