PITA_67 megaCluster: 1 Residual: 0.18

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
PITA_67	1	0.18	15	0	0.941086	0

Members

Displaying 1 - 40 of 40

TFBS DB TF

TFs	percTargets	pValue
V_NFKAPPAB_01_M00054	0.473684	0.0000000744

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
0.0000000000078	AAANAGAAAARA	NA	0.000048	CCCNCCCCNCCC	Klf4_MA0039.2, SP1_MA0079.2, SP1_MA0079.1, V$SP1_02_M01303, V$SP1_Q6_01_M00931, V$SP4_Q5_M01273, V$KLF7_03_M02773, V$SP1_Q4_01_M00932, V$MAZ_Q6_01_M02023, V$SP1_Q2_01_M00933, V$SP1_Q6_M00196, V$GKLF_02_M01588, V$ZFP281_01_M01597, V$CACD_01_M01113, V$GC_01_M00255, V$ZNF219_01_M01122, V$SP1_03_M02281, V$CKROX_Q2_M01175, V$ZFP281_04_M02831, V$MAZR_01_M00491, V$UF1H3BETA_Q6_M01068, V$SP1_01_M00008, V$BCL6B_04_M02844, V$KROX_Q6_M00982, V$FKLF_Q5_M01837, V$ZFP740_03_M02834, V$EGR1_Q6_M01873, V$MAZ_Q6_M00649, V$EKLF_Q5_M01874, V$SP2_01_M01783, V$SP1SP3_Q4_M01219, V$ASCL2_04_M02841, V$SMAD4_04_M02898, V$KLF15_Q2_M01714, V$EGR1_06_M02744, V$WT1_Q6_01_M02036, V$ZFP410_04_M02936, V$ETF_Q6_M00695, V$E2F3_Q6_M02089, V$ZBP89_Q4_M01816, V$CACCCBINDINGFACTOR_Q6_M00721, V$WT1_Q6_M01118, Klf7.1, Zfp281.2, Bcl6b.2, Zfp740.1, Smad3.1, Ascl2.2, Egr1.1, Zfp410.1, Sp4.1, Sox13.2, Egr1.2, Zif268.1, KLF16_C2H2_DBD_monomeric_11_1, SP1_C2H2_DBD_monomeric_11_1, ZNF740_C2H2_full_monomeric_10_1, SP3_C2H2_DBD_monomeric_11_1, SP4_C2H2_full_monomeric_17_1, Zfp740_C2H2_DBD_monomeric_10_1, SP8_C2H2_DBD_monomeric_12_1

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
0.98	CCGCGA	NA	1.02	CCGCGNCT	NA

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.44	TCGCGC	NA	NA	0.54	TNGCGCCA	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
mmu-miR-666-3p	0.785714	0.00000195

3p UTR TargetScan

miRNAs	percTargets	pValue
NA

107569 5'-nucleotidase, cytosolic III Details for - - 5'-nucleotidase, cytosolic III GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 107569 Tuberculist Genomic Region	12142 PR domain containing 1, with ZNF domain Details for - - PR domain containing 1, with ZNF domain GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12142 Tuberculist Genomic Region
12349 carbonic anhydrase 2 Details for - - carbonic anhydrase 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12349 Tuberculist Genomic Region	12524 CD86 antigen Details for - - CD86 antigen GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12524 Tuberculist Genomic Region
13537 dual specificity phosphatase 2 Details for RP23-206D14.6 - dual specificity phosphatase 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 13537 Tuberculist Genomic Region	14042 exostoses (multiple) 1 Details for - - exostoses (multiple) 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14042 Tuberculist Genomic Region
14190 fibrinogen-like protein 2 Details for - - fibrinogen-like protein 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14190 Tuberculist Genomic Region	14528 GTP cyclohydrolase 1 Details for - - GTP cyclohydrolase 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14528 Tuberculist Genomic Region
16153 interleukin 10 Details for AL513351.1 - interleukin 10 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 16153 Tuberculist Genomic Region	16193 interleukin 6 Details for - - interleukin 6 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 16193 Tuberculist Genomic Region
16468 jumonji, AT rich interactive domain 2 Details for - - jumonji, AT rich interactive domain 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 16468 Tuberculist Genomic Region	18712 proviral integration site 1 Details for - - proviral integration site 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 18712 Tuberculist Genomic Region
20821 tripartite motif-containing 21 Details for - - tripartite motif-containing 21 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20821 Tuberculist Genomic Region	21939 CD40 antigen Details for RP23-428M13.1 - CD40 antigen GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 21939 Tuberculist Genomic Region
238393 serine (or cysteine) peptidase inhibitor, clade A, member 3F Details for - - serine (or cysteine) peptidase inhibitor, clade A, member 3F GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 238393 Tuberculist Genomic Region	240354 mucosa associated lymphoid tissue lymphoma translocation gene 1 Details for - - mucosa associated lymphoid tissue lymphoma translocation gene 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 240354 Tuberculist Genomic Region
245944 vacuolar protein sorting 54 (yeast) Details for RP23-154K13.1 - vacuolar protein sorting 54 (yeast) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 245944 Tuberculist Genomic Region	246198 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6 Details for RP23-94N18.5 - myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 246198 Tuberculist Genomic Region
268301 sosondowah ankyrin repeat domain family member C Details for - - sosondowah ankyrin repeat domain family member C GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 268301 Tuberculist Genomic Region	320509 RIKEN cDNA 9930022D16 gene Details for RP23-465A12.2 - RIKEN cDNA 9930022D16 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 320509 Tuberculist Genomic Region
330122 chemokine (C-X-C motif) ligand 3 Details for - - chemokine (C-X-C motif) ligand 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 330122 Tuberculist Genomic Region	434219 tripartite motif-containing 30C Details for - - tripartite motif-containing 30C GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 434219 Tuberculist Genomic Region
434484 Sp140 nuclear body protein Details for - - Sp140 nuclear body protein GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 434484 Tuberculist Genomic Region	547253 poly (ADP-ribose) polymerase family, member 14 Details for - - poly (ADP-ribose) polymerase family, member 14 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 547253 Tuberculist Genomic Region
71982 sorting nexin 10 Details for - - sorting nexin 10 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 71982 Tuberculist Genomic Region	75767 RAB11 family interacting protein 1 (class I) Details for - - RAB11 family interacting protein 1 (class I) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 75767 Tuberculist Genomic Region
17873 growth arrest and DNA-damage-inducible 45 beta Details for - - growth arrest and DNA-damage-inducible 45 beta GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 17873 Tuberculist Genomic Region	18854 promyelocytic leukemia Details for - - promyelocytic leukemia GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 18854 Tuberculist Genomic Region
18950 purine-nucleoside phosphorylase Details for - - purine-nucleoside phosphorylase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 18950 Tuberculist Genomic Region	210808 laccase (multicopper oxidoreductase) domain containing 1 Details for - - laccase (multicopper oxidoreductase) domain containing 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 210808 Tuberculist Genomic Region
214855 AT rich interactive domain 5A (MRF1-like) Details for - - AT rich interactive domain 5A (MRF1-like) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 214855 Tuberculist Genomic Region	229227 RIKEN cDNA 4932438A13 gene Details for CT7-315N12.1 - RIKEN cDNA 4932438A13 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 229227 Tuberculist Genomic Region
320129 adrenergic receptor kinase, beta 2 Details for - - adrenergic receptor kinase, beta 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 320129 Tuberculist Genomic Region	84035 kringle containing transmembrane protein 1 Details for RP23-293J16.1 - kringle containing transmembrane protein 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 84035 Tuberculist Genomic Region
12702 suppressor of cytokine signaling 3 Details for RP23-268N22.6 - suppressor of cytokine signaling 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12702 Tuberculist Genomic Region	407821 zinc and ring finger 3 Details for RP23-293J16.2 - zinc and ring finger 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 407821 Tuberculist Genomic Region
628705 PHD finger protein 11C Details for mCG_1037415 - PHD finger protein 11C GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 628705 Tuberculist Genomic Region	72580 zinc finger with UFM1-specific peptidase domain Details for - - zinc finger with UFM1-specific peptidase domain GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 72580 Tuberculist Genomic Region
108078 oxidized low density lipoprotein (lectin-like) receptor 1 Details for - - oxidized low density lipoprotein (lectin-like) receptor 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 108078 Tuberculist Genomic Region	257632 nucleotide-binding oligomerization domain containing 2 Details for - - nucleotide-binding oligomerization domain containing 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 257632 Tuberculist Genomic Region

Summary

Members

Details for - - 5'-nucleotidase, cytosolic III

Details for - - PR domain containing 1, with ZNF domain

Details for - - carbonic anhydrase 2

Details for - - CD86 antigen

Details for RP23-206D14.6 - dual specificity phosphatase 2

Details for - - exostoses (multiple) 1

Details for - - fibrinogen-like protein 2

Details for - - GTP cyclohydrolase 1

Details for AL513351.1 - interleukin 10

Details for - - interleukin 6

Details for - - jumonji, AT rich interactive domain 2

Details for - - proviral integration site 1

Details for - - tripartite motif-containing 21

Details for RP23-428M13.1 - CD40 antigen

Details for - - serine (or cysteine) peptidase inhibitor, clade A, member 3F

Details for - - mucosa associated lymphoid tissue lymphoma translocation gene 1

Details for RP23-154K13.1 - vacuolar protein sorting 54 (yeast)

Details for RP23-94N18.5 - myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6

Details for - - sosondowah ankyrin repeat domain family member C

Details for RP23-465A12.2 - RIKEN cDNA 9930022D16 gene

Details for - - chemokine (C-X-C motif) ligand 3

Details for - - tripartite motif-containing 30C

Details for - - Sp140 nuclear body protein

Details for - - poly (ADP-ribose) polymerase family, member 14

Details for - - sorting nexin 10

Details for - - RAB11 family interacting protein 1 (class I)

Details for - - growth arrest and DNA-damage-inducible 45 beta

Details for - - promyelocytic leukemia

Details for - - purine-nucleoside phosphorylase

Details for - - laccase (multicopper oxidoreductase) domain containing 1

Details for - - AT rich interactive domain 5A (MRF1-like)

Details for CT7-315N12.1 - RIKEN cDNA 4932438A13 gene

Details for - - adrenergic receptor kinase, beta 2

Details for RP23-293J16.1 - kringle containing transmembrane protein 1

Details for RP23-268N22.6 - suppressor of cytokine signaling 3

Details for RP23-293J16.2 - zinc and ring finger 3

Details for mCG_1037415 - PHD finger protein 11C

Details for - - zinc finger with UFM1-specific peptidase domain

Details for - - oxidized low density lipoprotein (lectin-like) receptor 1

Details for - - nucleotide-binding oligomerization domain containing 2

GO Terms

3p UTR PITA